PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os03g50110.1 | ||||||||
Common Name | LOC9266093, Os03g0708800, OSNPB_030708800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | GeBP | ||||||||
Protein Properties | Length: 376aa MW: 40024.8 Da PI: 7.0732 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 87.1 | 2.3e-27 | 87 | 181 | 2 | 97 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskk 94 +fqr+wse+De+ +LqGl+ + +g d++ fy+ +++s+ + +++sql+eK+rrLK+Kf+++++++++g +p+ ++hd+++++l+++ LOC_Os03g50110.1 87 KFQRIWSESDELRFLQGLLGC-GAQGLVFPRDLNVFYDRFSESMPSPYTRSQLSEKLRRLKNKFRGMSARVARGLDPARLAPHDRDVLHLCSR 178 79*******************.556878888************************************************************** PP DUF573 95 iWg 97 +W+ LOC_Os03g50110.1 179 LWD 181 **8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 1.3E-24 | 88 | 181 | IPR007592 | Protein of unknown function DUF573 |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0020039 | anatomy | leaf lamina |
Sequence ? help Back to Top |
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Protein Sequence Length: 376 aa Download sequence Send to blast |
MASDQTLPVP VSVELPPAAP NPPDPTAPLL PHADDPSAPP AAAAAARKLP VKRRSPPPRP 60 SSPSSSDPAS SDPAAKQQPQ QPPPPFKFQR IWSESDELRF LQGLLGCGAQ GLVFPRDLNV 120 FYDRFSESMP SPYTRSQLSE KLRRLKNKFR GMSARVARGL DPARLAPHDR DVLHLCSRLW 180 DPANAATSPF AAAGDASSGN KRRRAAPRAG PLMPPDPSGD SNSHDYNGGI SAGTPGAFGD 240 GHGGEEMMYL EQESGHFGYH GDVAIAADGS LDGIVKVQPE TLPALPSIGD IAVHSENGNG 300 KAVVPRSNEH HMANAVLDIF EECLREVKAN GITYGANVNG GSELARRWRA QRIDELDVLS 360 RRLRLLVEDA AAAGR* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.50527 | 0.0 | callus| flower| leaf| panicle| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | Q53RK1 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os03g50110.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os03g50110 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC087181 | 0.0 | AC087181.9 Oryza sativa Japonica Group cultivar Nipponbare chromosome 3 clone OSJNBa0018H01 map R1538, complete sequence. | |||
GenBank | AP014959 | 0.0 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. | |||
GenBank | CT833899 | 0.0 | CT833899.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN056B15, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015628567.1 | 0.0 | probable transcription factor At5g28040 | ||||
TrEMBL | A0A0E0P0A2 | 0.0 | A0A0E0P0A2_ORYRU; Uncharacterized protein | ||||
TrEMBL | Q53RK1 | 0.0 | Q53RK1_ORYSJ; Expressed protein | ||||
STRING | ORUFI03G32760.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | OS03T0708800-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8695 | 32 | 43 | Representative plant | OGRP9800 | 9 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04930.2 | 2e-09 | DNA-binding storekeeper protein-related transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os03g50110.1 |
Entrez Gene | 9266093 |