PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LOC_Os03g49880.1

Common Name

LOC4333856, Os03g0706500, Os03g49880, OSNPB_030706500, OsTB1, TCP8

Organism

Oryza sativa subsp. japonica

Taxonomic ID

39947

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

TCP

Protein Properties

Length: 389aa MW: 41503.9 Da PI: 7.4258

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LOC_Os03g49880.1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	157.2	9.2e-49	112	274	1	136
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.... 88 aa++kdrhski+T++g+RdRR+Rls+++a++fF+Lqd+LGfdk+skt++WLl+++k+ai e++++ +++s c e++sss s++ ++++ LOC_Os03g49880.1 112 AAARKDRHSKISTAGGMRDRRMRLSLDVARKFFALQDMLGFDKASKTVQWLLNMSKAAIREIMSD--DASSVCeEDGSSSLSVDGKQQQhsnp 202 589************************************************************..66667887777777776444444567 PP TCP 89 ........................kaaksaakskksqksaasalnlakesrakarararertrekmriknkl 136 k +++aa++k++++ a+++ ++kesrakar+rarert+ek+r+++++ LOC_Os03g49880.1 203 adrgggagdhkgaahghsdgkkpaKPRRAAANPKPPRRLANAHPVPDKESRAKARERARERTKEKNRMRWVT 274 88899999999999*****77777777************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	9.0E-45	114	270	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	34.132	115	173	IPR017887	Transcription factor TCP subgroup
PROSITE profile	PS51370	12.264	250	267	IPR017888	CYC/TB1, R domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048831	Biological Process	regulation of shoot system development

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0009049	anatomy	inflorescence
PO:0001083	developmental stage	inflorescence development stage
PO:0007006	developmental stage	IL.00 inflorescence just visible stage

Sequence ? help Back to Top
Protein Sequence Length: 389 aa Download sequence Send to blast
MLPFFDSPSP MDIPLYQQLQ LTPPSPKPDH HHHHHSTFFY YHHHPPPSPS FPSFPSPAAA 60 TIASPSPAMH PFMDLELEPH GQQLAAAEED GAGGQGVDAG VPFGVDGAAA AAAARKDRHS 120 KISTAGGMRD RRMRLSLDVA RKFFALQDML GFDKASKTVQ WLLNMSKAAI REIMSDDASS 180 VCEEDGSSSL SVDGKQQQHS NPADRGGGAG DHKGAAHGHS DGKKPAKPRR AAANPKPPRR 240 LANAHPVPDK ESRAKARERA RERTKEKNRM RWVTLASAIS VEAATAAAAA GEDKSPTSPS 300 NNLNHSSSTN LVSTELEDGS SSTRHNGVGV SGGRMQEISA ASEASDVIMA FANGGAYGDS 360 GSYYLQQQHQ QDQWELGGVV YANSRHYC*

Sequence ? help Back to Top

Protein Sequence Length: 389 aa Download sequence Send to blast

MLPFFDSPSP MDIPLYQQLQ LTPPSPKPDH HHHHHSTFFY YHHHPPPSPS FPSFPSPAAA  60
TIASPSPAMH PFMDLELEPH GQQLAAAEED GAGGQGVDAG VPFGVDGAAA AAAARKDRHS  120
KISTAGGMRD RRMRLSLDVA RKFFALQDML GFDKASKTVQ WLLNMSKAAI REIMSDDASS  180
VCEEDGSSSL SVDGKQQQHS NPADRGGGAG DHKGAAHGHS DGKKPAKPRR AAANPKPPRR  240
LANAHPVPDK ESRAKARERA RERTKEKNRM RWVTLASAIS VEAATAAAAA GEDKSPTSPS  300
NNLNHSSSTN LVSTELEDGS SSTRHNGVGV SGGRMQEISA ASEASDVIMA FANGGAYGDS  360
GSYYLQQQHQ QDQWELGGVV YANSRHYC*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.13012	0.0	panicle

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	32992292	0.0
Expression Atlas	Q8LN68	-

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in the axillary bud of the first formed leaf node (PubMed:17655651). Expressed in axillary buds, shoot apical meristem, young leaves, vascular tissues and the tips of crown roots (PubMed:20547591). {ECO:0000269\|PubMed:17655651, ECO:0000269\|PubMed:20547591}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that functions as a negative regulator of lateral branching, presumably through its expression in axillary buds (PubMed:12581309, PubMed:20547591). Involved in the fine tuning of shoot branching. May function as an integrator of multiple signaling pathways to regulate the development of axillary buds. Works partially downstream of strigolactones to inhibit bud outgrowth (PubMed:20547591). Binds to MADS57 to suppress the negative regulation of D14 by MADS57 and balance the expression of D14 for tillering (PubMed:23463009). {ECO:0000269\|PubMed:12581309, ECO:0000269\|PubMed:20547591, ECO:0000269\|PubMed:23463009}.

Function -- GeneRIF ? help Back to Top
results demonstrate that both mTB1 and OsTB1 moderately regulate the tiller development in rice [PMID: 21912860]

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LOC_Os03g49880.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Phenotype -- Mutation ? help Back to Top
Source	ID
RiceGE	Os03g49880

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB088343	0.0	AB088343.1 Oryza sativa Japonica Group OsTB1 gene for teosinte branched1 protein, complete cds.
GenBank	AC091775	0.0	AC091775.10 Oryza sativa chromosome 3 BAC OSJNBa0004G17 genomic sequence, complete sequence.
GenBank	AK107083	0.0	AK107083.1 Oryza sativa Japonica Group cDNA clone:002-121-G01, full insert sequence.
GenBank	AP014959	0.0	AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015630237.1	0.0	transcription factor TB1-like
Swissprot	Q8LN68	0.0	TB1_ORYSJ; Transcription factor TB1
TrEMBL	Q7Y1X7	0.0	Q7Y1X7_ORYSI; Teosinte-branching 1
STRING	OS03T0706500-01	0.0	(Oryza sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7253	36	51
Representative plant	OGRP12650	4	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68800.1	1e-22	TCP domain protein 12

Link Out ? help Back to Top
Phytozome	LOC_Os03g49880.1
Entrez Gene	4333856

Publications ? help Back to Top
Lukens L,Doebley J Molecular evolution of the teosinte branched gene among maize and related grasses. Mol. Biol. Evol., 2001. 18(4): p. 627-38 [PMID:11264415] Takeda T, et al. The OsTB1 gene negatively regulates lateral branching in rice. Plant J., 2003. 33(3): p. 513-20 [PMID:12581309] Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Arite T, et al. DWARF10, an RMS1/MAX4/DAD1 ortholog, controls lateral bud outgrowth in rice. Plant J., 2007. 51(6): p. 1019-29 [PMID:17655651] Lewis JM, et al. Overexpression of the maize Teosinte Branched1 gene in wheat suppresses tiller development. Plant Cell Rep., 2008. 27(7): p. 1217-25 [PMID:18392625] Minakuchi K, et al. FINE CULM1 (FC1) works downstream of strigolactones to inhibit the outgrowth of axillary buds in rice. Plant Cell Physiol., 2010. 51(7): p. 1127-35 [PMID:20547591] Mondragón-Palomino M,Trontin C High time for a roll call: gene duplication and phylogenetic relationships of TCP-like genes in monocots. Ann. Bot., 2011. 107(9): p. 1533-44 [PMID:21444336] Choi MS, et al. Teosinte Branched 1 modulates tillering in rice plants. Plant Cell Rep., 2012. 31(1): p. 57-65 [PMID:21912860] Xia K, et al. OsTIR1 and OsAFB2 downregulation via OsmiR393 overexpression leads to more tillers, early flowering and less tolerance to salt and drought in rice. PLoS ONE, 2012. 7(1): p. e30039 [PMID:22253868] Guo S, et al. The interaction between OsMADS57 and OsTB1 modulates rice tillering via DWARF14. Nat Commun, 2013. 4: p. 1566 [PMID:23463009] Byeon Y,Back K An increase in melatonin in transgenic rice causes pleiotropic phenotypes, including enhanced seedling growth, delayed flowering, and low grain yield. J. Pineal Res., 2014. 56(4): p. 408-14 [PMID:24571270] Yano K, et al. Isolation of a novel lodging resistance QTL gene involved in strigolactone signaling and its pyramiding with a QTL gene involved in another mechanism. Mol Plant, 2015. [PMID:25381289] Chen Z,Gao X,Zhang J Alteration of osa-miR156e expression affects rice plant architecture and strigolactones (SLs) pathway. Plant Cell Rep., 2015. 34(5): p. 767-81 [PMID:25604991] Yano K, et al. Isolation of a novel lodging resistance QTL gene involved in strigolactone signaling and its pyramiding with a QTL gene involved in another mechanism. Mol Plant, 2015. 8(2): p. 303-14 [PMID:25616386] Jung H,Lee DK,Choi YD,Kim JK OsIAA6, a member of the rice Aux/IAA gene family, is involved in drought tolerance and tiller outgrowth. Plant Sci., 2015. 236: p. 304-12 [PMID:26025543] Li S The Arabidopsis thaliana TCP transcription factors: A broadening horizon beyond development. Plant Signal Behav, 2015. 10(7): p. e1044192 [PMID:26039357] Yang X, et al. Distinct Regulatory Changes Underlying Differential Expression of TEOSINTE BRANCHED1-CYCLOIDEA-PROLIFERATING CELL FACTOR Genes Associated with Petal Variations in Zygomorphic Flowers of Petrocosmea spp. of the Family Gesneriaceae. Plant Physiol., 2015. 169(3): p. 2138-51 [PMID:26351309] De Paolo S,Gaudio L,Aceto S Analysis of the TCP genes expressed in the inflorescence of the orchid Orchis italica. Sci Rep, 2015. 5: p. 16265 [PMID:26531864] Álvarez-Salgado E,Arredondo-Peter R Effect of the synthesis of rice non-symbiotic hemoglobins 1 and 2 in the recombinant Escherichia coli TB1 growth. F1000Res, 2015. 4: p. 1053 [PMID:26973784] Li X, et al. MicroRNA393 is involved in nitrogen-promoted rice tillering through regulation of auxin signal transduction in axillary buds. Sci Rep, 2016. 6: p. 32158 [PMID:27574184]