PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g49170.1
Common NameLOC4333810, Os03g0698800, OSJNBb0017F17.19
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C3H
Protein Properties Length: 765aa    MW: 81043.5 Da    PI: 7.0756
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g49170.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.63.8e-07326346526
                       --SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                       +C++f++ G C++Gd C +aHg
  LOC_Os03g49170.1 326 PCPDFRK-GVCRRGDMCEYAHG 346
                       8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.201.2E-17108186IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029716.467108183IPR020683Ankyrin repeat-containing domain
SMARTSM002480.019108138IPR002110Ankyrin repeat
PfamPF127969.5E-11108177IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484032.18E-15108186IPR020683Ankyrin repeat-containing domain
SMARTSM002480.039143175IPR002110Ankyrin repeat
PROSITE profilePS5008812.876143178IPR002110Ankyrin repeat
PRINTSPR014157.6E-5144159IPR002110Ankyrin repeat
PRINTSPR014157.6E-5162176IPR002110Ankyrin repeat
SMARTSM003561.1E-5321347IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.5E-4325348IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-4326346IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.375326348IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.0E-4354384IPR000571Zinc finger, CCCH-type
SMARTSM0035637356379IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009066anatomyanther
PO:0001004developmental stageanther development stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 765 aa     Download sequence    Send to blast
MFLLMASVLP IRQAPMNGTP ISASAAAGVD GVGAAVALAA ATKKSAAAAA AVAEMAKTLT  60
VDTDDAFAGL LELAADDDAE GLRRALERAP PAAADEAGLW YGRRKVLEHR TPLMVAATYG  120
SLAVLRLLLS LPSVDVNRRC GSDGTTALHC AASGGSPSCV EAVKLLLAAG ADADATDASG  180
YRPADVISVP PKMFDAKIAL QDLLGCPKAG HGVLRVVTRA ANSMLSPVSS PTAEDARSPS  240
AAVMMTTKFA DLPRVVTSEK KEYPVDPSLP DIKNSIYASD EFRMYSFKIR PCSRAYSHDW  300
TECPFVHPGE NARRRDPRKY HYSCVPCPDF RKGVCRRGDM CEYAHGVFEC WLHPAQYRTR  360
LCKDGTSCNR RVCFFAHTTD ELRPLYVSTG SAVPSPRASA TATMEMAAAM GLMPGSPSSV  420
SAVMSPFTPP MSPSGNGMPP SLGWQQPNVP TLHLPGSSLQ SSRLRTSLSA RDMPADDYSL  480
MQDIDSQLIN DLCYSRIGSS TGNHTSRTKS LNPSNLDDLF SAEMVSSPRY SNADQGGMFS  540
PSHKAAFLNQ FQQQQQALLS PINTVFSPKS VDNQQLPSHS SLLQASLGIS SPGRMSPRCV  600
ESGSPMNSHL AAALAQREKQ QQTMRSLSSR DLGPSAARAS GVVGSPLSSS WSKWGSPSGT  660
PDWGVNGEEL GKLRRSSSFE LRSGGDDPDL SWVHTLVKES PPEKQVTTAE SINSVGPSPL  720
MPPSVSNGEG PSLNAPLDGH DQAAVIGALL EQMQLDQHIG SLAT*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.742920.0flower| leaf| panicle| root| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1154547620.0
Expression AtlasQ10EL1-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g49170.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g49170
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0973680.0AC097368.3 Oryza sativa chromosome 3 BAC OSJNBb0017F17 genomic sequence, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632054.10.0zinc finger CCCH domain-containing protein 24
SwissprotQ10EL10.0C3H24_ORYSJ; Zinc finger CCCH domain-containing protein 24
TrEMBLI1PEL90.0I1PEL9_ORYGL; Uncharacterized protein
STRINGOS03T0698800-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82337126
Representative plantOGRP7091569
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Wang D, et al.
    Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice.
    BMC Genomics, 2008. 9: p. 44
    [PMID:18221561]