PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | LOC_Os03g49132.1 | ||||||||
Common Name | Os03g0698300, OSJNBb0017F17.23, OSNPB_030698300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 477aa MW: 49312.6 Da PI: 4.6986 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 10.9 | 0.0014 | 247 | 267 | 1 | 21 |
EEETTTTEEESSHHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHir 21 ++C++Cg++F ++ L H LOC_Os03g49132.1 247 FVCSICGRCFGSHQALGGHVL 267 89********99998877765 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 4.86E-7 | 245 | 269 | No hit | No description |
PROSITE profile | PS50157 | 9.411 | 247 | 274 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.13 | 247 | 269 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 3.0E-4 | 247 | 265 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 249 | 269 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 4.86E-7 | 401 | 428 | No hit | No description |
PROSITE profile | PS50157 | 10.076 | 406 | 433 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.13 | 406 | 428 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 9.8E-7 | 406 | 430 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 408 | 428 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048235 | Biological Process | pollen sperm cell differentiation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 477 aa Download sequence Send to blast |
MAVNSGDRAR ARGHHGDDDE EGVAVVGEDY PYCSDSDSDD DDDVDRYVFL ARQPAPPVDR 60 DDAEADAGAE GTGCCKRKRR VVDDDDDDDG FSPRQPALLD GSGGQAAEEE EDDEGSSDDD 120 DAMAPRGEAG GGGRGRGVGK VSRKKARLVD LIRSPLLPAE LDGSDKAAPP PPRGVCPKKI 180 AVVVQAKNRK RRRFVDGGEE QEPQPQPPVR GKRSRGPDLE ASEGLQTASA AAAAAAAEAA 240 ERASKRFVCS ICGRCFGSHQ ALGGHVLGHK KKAKNAAIAA AARDATTTAV TEAVAPASQR 300 QSFFAADING QDERGCDGAE GSRYDDDEEK SPVVVDDVAA CHDADVDESR GHGKAESASA 360 IDAGGDAGNN KVAHGDGEEN DKIAGVVVAS SHDGDSDVGK MKIVQHKCDE CGKVCLTGQA 420 LGGHMSKHRR TRPAANGGEG PATATVADGG AQTVRLIGDD VCLQRAVAIA GFHSAQ* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 188 | 192 | RKRRR |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
Expression Atlas | Q851S0 |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | LOC_Os03g49132.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
RiceGE | Os03g49132 |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC097368 | 0.0 | AC097368.3 Oryza sativa chromosome 3 BAC OSJNBb0017F17 genomic sequence, complete sequence. | |||
GenBank | AP014959 | 0.0 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
TrEMBL | Q851S0 | 0.0 | Q851S0_ORYSJ; Os03g0698300 protein | ||||
STRING | ORGLA03G0281100.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP16380 | 7 | 7 |
Link Out ? help Back to Top | |
---|---|
Phytozome | LOC_Os03g49132.1 |