PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os03g47970.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | GATA | ||||||||
Protein Properties | Length: 258aa MW: 27905.1 Da PI: 4.3154 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 51.7 | 1.2e-16 | 215 | 249 | 1 | 33 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkk 33 C+nCgt++ Tp +Rrgp g++tLCnaCGl+++ k LOC_Os03g47970.2 215 CQNCGTSEkmTPAMRRGPAGPRTLCNACGLMWANK 249 ********************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00979 | 3.5E-10 | 74 | 109 | IPR010399 | Tify domain |
PROSITE profile | PS51320 | 14.985 | 74 | 109 | IPR010399 | Tify domain |
Pfam | PF06200 | 1.7E-12 | 77 | 108 | IPR010399 | Tify domain |
PROSITE profile | PS51017 | 13.364 | 143 | 185 | IPR010402 | CCT domain |
Pfam | PF06203 | 9.1E-15 | 143 | 183 | IPR010402 | CCT domain |
SMART | SM00401 | 6.4E-5 | 209 | 257 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.28E-9 | 212 | 250 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 7.2E-14 | 214 | 249 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 3.06E-13 | 214 | 249 | No hit | No description |
Pfam | PF00320 | 3.6E-14 | 215 | 249 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 215 | 242 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0000977 | Molecular Function | RNA polymerase II regulatory region sequence-specific DNA binding | ||||
GO:0001085 | Molecular Function | RNA polymerase II transcription factor binding | ||||
GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | ||||
GO:0003682 | Molecular Function | chromatin binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MPDAAAAAAA AQDADAVMRD APADAAAGGG DNDDDDGDDG TEEDEEEDDD EEGDEEELPP 60 AEDPAAPEPV SALLPGSPNQ LTLLFQGEVY VFESVTPEKV QAVLLLLGRS EMPPGLANMV 120 LPNQRENRGY DDLLQRTDIP AKRVASLIRF REKRKERNFD KKIRYAVRKE VALRMQRRKG 180 QFAGRANMEG ESLSPGCELA SQGSGQDFLS RESKCQNCGT SEKMTPAMRR GPAGPRTLCN 240 ACGLMWANKV LLHVLMS* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.2857 | 0.0 | callus| flower| leaf| panicle| root| stem| vegetative meristem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 42821640 | 0.0 | ||||
Expression Atlas | Q10F24 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os03g47970.2 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By drought and salt stresses. {ECO:0000269|PubMed:19618278}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os03g47970 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK105025 | 0.0 | AK105025.2 Oryza sativa Japonica Group cDNA clone:001-011-G08, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015628049.1 | 0.0 | GATA transcription factor 18 | ||||
Swissprot | Q10F25 | 0.0 | GAT18_ORYSJ; GATA transcription factor 18 | ||||
TrEMBL | Q10F24 | 0.0 | Q10F24_ORYSJ; GATA transcription factor 27, putative, expressed | ||||
STRING | ORUFI03G31080.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | OS03T0684000-01 | 0.0 | (Oryza sativa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21175.2 | 6e-64 | ZIM-like 1 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os03g47970.2 |
Publications ? help Back to Top | |||
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