PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g47740.3
Common NameLOC4333726, Os03g0680800, Os03g47740, OSNPB_030680800
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family TALE
Protein Properties Length: 643aa    MW: 71055.9 Da    PI: 6.1855
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g47740.3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.45.7e-094014381954
                       HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
          Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                       Fe   ++yp+ +e+  LA+++gLt +q+++WF N R +
  LOC_Os03g47740.3 401 FEHflHPYPKDSEKLMLARQTGLTRSQISNWFINARVR 438
                       664559******************************88 PP
2BELL120.29.1e-39264335172
              BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                       e+qelq+k akL+ +l+eVd++Yk+y++q+q+v+ssF++vag g+akpYt++Al++iS+hFrcLkdai +qi
  LOC_Os03g47740.3 264 EKQELQNKMAKLMAMLDEVDRKYKHYYHQMQIVVSSFDMVAGSGAAKPYTAVALQTISKHFRCLKDAINDQI 335
                       689*******************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.3E-56188333IPR006563POX domain
PfamPF075262.3E-51194331IPR006563POX domain
PROSITE profilePS5007112.357379442IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.9E-28381451IPR009057Homeodomain-like
SMARTSM003891.6E-9382446IPR001356Homeobox domain
CDDcd000861.04E-12382443No hitNo description
SuperFamilySSF466892.99E-17383448IPR009057Homeodomain-like
PfamPF059201.0E-17399438IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020039anatomyleaf lamina
Sequence ? help Back to Top
Protein Sequence    Length: 643 aa     Download sequence    Send to blast
MATYYSSPGN ERDSQAMYPA DSGNSSYPVP SAIGNMLYPG NGSSGPYTEF SGIIQHQQNF  60
MELPGHPTAI SQDSSSREPN MVASYMDQRS FGPAKDMRNE MLMHLMDGAH NAGADLIHND  120
THSSAQIEFG LLNNHNSMSV APAPGQGLSL SLNTHILAPS YPYWSAKTEL LTPHSYHGDD  180
NRMKNMQSEA SQAIRNSKYL KAAQELLDEV VSVWKSIKQK AQKDQAEAGK SDNKEAEGGS  240
KGEGVSSNPQ ESTANAAPEI SAAEKQELQN KMAKLMAMLD EVDRKYKHYY HQMQIVVSSF  300
DMVAGSGAAK PYTAVALQTI SKHFRCLKDA INDQINVIRK KLGEEESSSG KEGKLTRLRY  360
IDQQLRQQRA FQQYGLLQQN AWRPQRGLPE NSVSILRAWL FEHFLHPYPK DSEKLMLARQ  420
TGLTRSQISN WFINARVRLW KPMIEDMYKE EIGEADLDSN SSSDNVPRSK DKIATSEDKE  480
DLKSSMSQTY QPSQLGESKA NIGMMSLGGA PAGFHNEGNQ DDSFMNLMLK DQRPGEAEGS  540
LLHDAVAHHS DENARFMAYH LSGLGRYGNS NVSLTLGLQH PDNRLSVQNT HQPGFAGAGE  600
EIYNSTASLG VAAASSSDYE STNQIDQRQR FEPSPLMHDF VA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A3e-16388445158Homeobox protein Meis1
4xrs_B3e-16388445158Homeobox protein Meis1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.79760.0callus| flower| leaf| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329805670.0
Expression AtlasQ9AYD9-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g47740.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g47740
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0699940.0AK069994.1 Oryza sativa Japonica Group cDNA clone:J023038C04, full insert sequence.
GenBankFJ9402090.0FJ940209.1 Oryza sativa Japonica Group clone KCS181A11 homeodomain protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631000.10.0BEL1-like homeodomain protein 7
RefseqXP_025879417.10.0BEL1-like homeodomain protein 7
TrEMBLQ9AYD90.0Q9AYD9_ORYSJ; Associated with HOX family protein, expressed
STRINGOGLUM03G29930.10.0(Oryza glumipatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34610.21e-113BEL1-like homeodomain 6