PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os03g47200.1 | ||||||||
Common Name | Os03g0675400, Os03g47200, OSNPB_030675400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | bZIP | ||||||||
Protein Properties | Length: 157aa MW: 17150.6 Da PI: 12.3704 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 34.3 | 5e-11 | 50 | 94 | 3 | 47 |
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkk 47 + +r rrk++NRe+ArrsR+RK+ ++eL+ +++ L N++L+ LOC_Os03g47200.1 50 DERRLRRKISNRESARRSRARKQRHLDELRARAERLRRCNRELAA 94 66899***********************************99975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 8.3E-8 | 42 | 95 | No hit | No description |
SMART | SM00338 | 4.4E-6 | 48 | 126 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.208 | 50 | 95 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.6E-7 | 52 | 93 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.75E-8 | 52 | 96 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 55 | 70 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 157 aa Download sequence Send to blast |
MPLMHLLAPP AQAFVVAPPR VAPAFDGAAA PPREDDPAAD QPPEREADAD ERRLRRKISN 60 RESARRSRAR KQRHLDELRA RAERLRRCNR ELAARGHAAR GRAGLVRLAN AWLRAEAAAL 120 TRRLAAARRA IALGQLYRPA AAAAAASGRS SRRSPR* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 64 | 71 | RRSRARKQ |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | Q9FRG2 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os03g47200.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os03g47200 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC079830 | 0.0 | AC079830.9 Oryza sativa chromosome 3 BAC OSJNBb0009F04 genomic sequence, complete sequence. | |||
GenBank | AP014959 | 0.0 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | Q9FRG2 | 1e-96 | Q9FRG2_ORYSJ; BZIP transcription factor family protein | ||||
STRING | ORUFI03G30430.1 | 9e-90 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP27211 | 4 | 5 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os03g47200.1 |