PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g47140.1
Common NameGRF9, LOC4333705, Os03g0674700, OsJ_12074, OSJNBa0035I24.1, OSJNBb0009F04
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family GRF
Protein Properties Length: 427aa    MW: 47852 Da    PI: 9.7588
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g47140.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC75.36.7e-24151195145
               WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                       d+epgrCrRtDGKkWRCs+++++++k+CErH++r+r+rsrk++e+
  LOC_Os03g47140.1 151 DPEPGRCRRTDGKKWRCSKEAMADHKYCERHINRNRHRSRKPVEN 195
                       79****************************************997 PP
2QLQ57.25e-2092127237
               QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                       +FT++Q+++L++Q+l+yKyL+a++P+P+ Ll  i+k
  LOC_Os03g47140.1  92 PFTPSQWMELEHQALIYKYLNAKAPIPSSLLISISK 127
                       9******************************99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009516.6E-1191127IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166621.76292127IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088802.6E-1492125IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.803151195IPR014977WRC domain
PfamPF088793.7E-20152194IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009049anatomyinflorescence
PO:0001083developmental stageinflorescence development stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MFADFSAAAM ELGEVLGLQG LTVPSTKEGD LSLIKRAAAG SFTQAAAASY PSPFLDEQKM  60
LRFAKAAHTL PSGLDFGREN EQRFLLSRTK RPFTPSQWME LEHQALIYKY LNAKAPIPSS  120
LLISISKSFR SSANRMSWRP LYQGFPNADS DPEPGRCRRT DGKKWRCSKE AMADHKYCER  180
HINRNRHRSR KPVENQSRKT VKETPCAGSL PSSVGQGSFK KAKVNEMKPR SISYWTDSLN  240
RTMANKEKGN KAAEENNGPL LNLTNQQPTL SLFSQLKQQN KPEKFNTAGD SESISSNTML  300
KPWESSNQQN NKSIPFTKMH DRGCLQSVLQ NFSLPKDEKM EFQKSKDSNV MTVPSTFYSS  360
PEDPRVSCHA PNMAQMQEDS ISSSWEMPQG GPLGEILTNS KNPDDSIMKP EARPYGWLLN  420
LEDHAM*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.998720.0callus| panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329686770.0
Expression AtlasQ9FRG8-
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g47140.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g47140
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0586590.0AK058659.1 Oryza sativa Japonica Group cDNA clone:001-018-F11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006650403.10.0PREDICTED: growth-regulating factor 9
SwissprotQ9FRG80.0GRF9_ORYSJ; Growth-regulating factor 9
TrEMBLA0A0D3FMB70.0A0A0D3FMB7_9ORYZ; Uncharacterized protein
STRINGOS03T0674700-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP131242529
Representative plantOGRP1393344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22840.12e-34growth-regulating factor 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Choi D,Kim JH,Kende H
    Whole genome analysis of the OsGRF gene family encoding plant-specific putative transcription activators in rice (Oryza sativa L.).
    Plant Cell Physiol., 2004. 45(7): p. 897-904
    [PMID:15295073]