PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os03g47036.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | TALE | ||||||||
Protein Properties | Length: 170aa MW: 20090 Da PI: 10.3486 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 33.2 | 9.2e-11 | 82 | 115 | 22 | 55 |
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55 +yps++e++ LA+++gL+++qV++WF N+R ++ LOC_Os03g47036.1 82 WPYPSEAEKAALAESTGLDKKQVTNWFINQRKRH 115 59*****************************985 PP | |||||||
2 | ELK | 36 | 1.5e-12 | 34 | 54 | 2 | 22 |
ELK 2 LKhqLlrKYsgyLgsLkqEFs 22 +++L++KYsgyL+sL++E+s LOC_Os03g47036.1 34 TRRHLMNKYSGYLNSLWTEIS 54 69******************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01188 | 7.1E-5 | 33 | 54 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 9.027 | 33 | 53 | IPR005539 | ELK domain |
Pfam | PF03789 | 9.4E-9 | 35 | 54 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 12.034 | 55 | 118 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.05E-18 | 57 | 126 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 2.1E-12 | 57 | 122 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-25 | 62 | 119 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.11E-11 | 64 | 119 | No hit | No description |
Pfam | PF05920 | 2.4E-17 | 75 | 114 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 93 | 116 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 170 aa Download sequence Send to blast |
MKHEDVSYDY EDEVAGGLPE KSAAFGENEV TTTTRRHLMN KYSGYLNSLW TEISNKKKNS 60 TGHLPRDARH KLLQWWHLHY RWPYPSEAEK AALAESTGLD KKQVTNWFIN QRKRHWKPKP 120 AAAMDAGFLQ MHPRWLNIPV WKYRFLQATL LRRLPMKIIF TNSYDARYK* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os03g47036.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os03g47036 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC090683 | 1e-138 | AC090683.7 Oryza sativa chromosome 3 BAC OSJNBa0035I24 genomic sequence, complete sequence. | |||
GenBank | AP014959 | 1e-138 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025879711.1 | 1e-94 | putative homeobox protein knotted-1-like 5 | ||||
Swissprot | Q75LX9 | 9e-96 | KNOS5_ORYSJ; Putative homeobox protein knotted-1-like 5 | ||||
TrEMBL | A0A0E0NZE4 | 1e-121 | A0A0E0NZE4_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI03G30320.1 | 1e-122 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4746 | 29 | 50 | Representative plant | OGRP167 | 17 | 148 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G08150.1 | 4e-33 | KNOTTED-like from Arabidopsis thaliana |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os03g47036.1 |