PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g46860.1
Common NameLOC4333691, Os03g0671800, OSNPB_030671800
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 386aa    MW: 39729.2 Da    PI: 7.3446
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g46860.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH474.7e-15192238455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        h ++Er+RR++iN++f eL +++P +     kK++Ka+iL  Av+Y+k++q
  LOC_Os03g46860.1 192 EHIIAERKRREKINQRFIELSTVIPGL-----KKMDKATILSDAVRYVKEMQ 238
                       699************************.....9*****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.09E-17180247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.031188237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-12191238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-18192248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.50E-15193242No hitNo description
SMARTSM003537.1E-16194243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MEDSSLFMEW AMETLQHLHP LPATPPPAGG GYAGDNATFP SLQALRESSV SQNGMAPPEP  60
TAHEGHRASN SWSSGDTDSV SGGGGGAVME HDGWSTSPNS VRCAAGGGGG GGGGGLWPVS  120
WNFSSAMTQP CNDQATPSNP PTTTRARYGG GGVRYLPAAV SPSPSAQTRR ASSKGNGGGG  180
SGSSSAAPYA QEHIIAERKR REKINQRFIE LSTVIPGLKK MDKATILSDA VRYVKEMQEK  240
LSELEQHQNG GVESAILLKK PCIATSSSDG GCPAASSAVA GSSSSGTARS SLPEIEAKIS  300
HGNVMVRIHG ENNGKGSLVR LLAAVEGLHL GITHTNVMPF SACTAIITIM AKVEDGVSVT  360
AEDIVGKLNT VLQQNSRNSA RETKS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1196201ERKRRE
2197202RKRREK
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329923990.0
Expression AtlasQ10FD6-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g46860.1
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g46860
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1071900.0AK107190.1 Oryza sativa Japonica Group cDNA clone:002-125-A03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629952.10.0transcription factor NAI1
TrEMBLQ10FD60.0Q10FD6_ORYSJ; BHLH transcription factor
STRINGOS03T0671800-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92731143
Representative plantOGRP1694033
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.16e-36bHLH family protein