PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os03g46790.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | bHLH | ||||||||
Protein Properties | Length: 266aa MW: 28748.9 Da PI: 5.1677 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 49.2 | 9.2e-16 | 116 | 161 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h +Er+RR++iN++f eL ++Pk+ kK++Ka+iL A YI++Lq LOC_Os03g46790.1 116 HVVAERKRREKINQRFMELSAVIPKL-----KKMDKATILSDAASYIRELQ 161 8899**********************.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 16.094 | 111 | 160 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.71E-18 | 114 | 177 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.1E-19 | 115 | 172 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.09E-16 | 116 | 165 | No hit | No description |
Pfam | PF00010 | 3.2E-13 | 116 | 161 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.4E-16 | 117 | 166 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 266 aa Download sequence Send to blast |
MDDSSLFLHW AVSTLQHQHP AAVAVVADDD ATFFSFQELC DTEEVVVVPV QEEVITEAHG 60 GGASRIGLAV AVDEHGGWSR SPNPGARPPS GGCGSNNLPL MSWDFSAASV AVQLEHVVAE 120 RKRREKINQR FMELSAVIPK LKKMDKATIL SDAASYIREL QEKLKALEEQ AAARVTEAAM 180 ATPSPARAMN HLPVPPEIEV RCSPTNNVVM VRIHCENGEG VIVRILAEVE EIHLRIINAN 240 VMPFLDQGAT MIITIAAKAS SSLLY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 3e-13 | 114 | 164 | 7 | 57 | Transcription factor MYC2 |
5gnj_B | 3e-13 | 114 | 164 | 7 | 57 | Transcription factor MYC2 |
5gnj_E | 3e-13 | 114 | 164 | 7 | 57 | Transcription factor MYC2 |
5gnj_F | 3e-13 | 114 | 164 | 7 | 57 | Transcription factor MYC2 |
5gnj_G | 3e-13 | 114 | 164 | 7 | 57 | Transcription factor MYC2 |
5gnj_I | 3e-13 | 114 | 164 | 7 | 57 | Transcription factor MYC2 |
5gnj_M | 3e-13 | 114 | 164 | 7 | 57 | Transcription factor MYC2 |
5gnj_N | 3e-13 | 114 | 164 | 7 | 57 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 119 | 124 | ERKRRE |
2 | 120 | 125 | RKRREK |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32992399 | 3e-40 | ||||
Expression Atlas | Q10FE3 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os03g46790.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os03g46790 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC116369 | 0.0 | AC116369.5 Oryza sativa chromosome 3 BAC OSJNBb0113I20 genomic sequence, complete sequence. | |||
GenBank | AC146718 | 0.0 | AC146718.2 Oryza sativa chromosome 3 B1130H05 genomic sequence, complete sequence. | |||
GenBank | AP014959 | 0.0 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012611 | 0.0 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025880235.1 | 1e-156 | LOW QUALITY PROTEIN: transcription factor NAI1 | ||||
TrEMBL | Q10FE3 | 0.0 | Q10FE3_ORYSJ; Helix-loop-helix DNA-binding domain containing protein | ||||
STRING | ORGLA03G0268800.1 | 1e-167 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP927 | 31 | 143 | Representative plant | OGRP656 | 15 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22750.2 | 5e-25 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os03g46790.1 |