PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os03g45750.1 | ||||||||
Common Name | LOC4333627, OsJ_11977, OSJNBb0065L20.23 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | LBD | ||||||||
Protein Properties | Length: 215aa MW: 22013 Da PI: 8.8896 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 140.2 | 6.6e-44 | 41 | 140 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +CaaCk+lrr+Ca++Cv+apyfp +p+kfanvhk+FGasnv+kll+++p ++r da+sslvyeA+ar+rdP+yG+vg i++lqqq+e l+a+ LOC_Os03g45750.1 41 PCAACKLLRRRCAAGCVFAPYFPPGEPHKFANVHKVFGASNVSKLLQEIPVQHRGDAVSSLVYEANARVRDPIYGCVGAISSLQQQVEALQAQ 133 7******************************************************************************************** PP DUF260 94 lallkee 100 lal+++e LOC_Os03g45750.1 134 LALAQAE 140 ***9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.747 | 40 | 141 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.5E-43 | 41 | 138 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MRDVVVAVGG GTKAASRQQG QGGVTLAAAA AGSGSGSAAS PCAACKLLRR RCAAGCVFAP 60 YFPPGEPHKF ANVHKVFGAS NVSKLLQEIP VQHRGDAVSS LVYEANARVR DPIYGCVGAI 120 SSLQQQVEAL QAQLALAQAE MVRLRMSNDY IGRRLRARGC GGGGGGGGGS TTTTTGSPSS 180 MSSPAKTAEP EPLCKPTPEL DMVVDQPDFG FWSY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-50 | 31 | 143 | 1 | 113 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-50 | 31 | 143 | 1 | 113 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.89189 | 0.0 | callus| flower| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32981573 | 0.0 | ||||
Expression Atlas | Q75GP0 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed predominantly in roots, and at low levels in shoots, floral stems and open flowers. {ECO:0000269|PubMed:12068116}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os03g45750.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os03g45750 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC139174 | 0.0 | AC139174.3 Oryza sativa chromosome 3 BAC OSJNBb0065L20 genomic sequence, complete sequence. | |||
GenBank | AP014959 | 0.0 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012611 | 0.0 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015629600.1 | 1e-155 | LOB domain-containing protein 4 | ||||
Swissprot | Q8LBW3 | 1e-57 | LBD12_ARATH; LOB domain-containing protein 12 | ||||
TrEMBL | A0A0D9ZI36 | 1e-154 | A0A0D9ZI36_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0NZ40 | 1e-154 | A0A0E0NZ40_ORYRU; Uncharacterized protein | ||||
TrEMBL | A2XKA0 | 1e-154 | A2XKA0_ORYSI; Uncharacterized protein | ||||
TrEMBL | Q75GP0 | 1e-154 | Q75GP0_ORYSJ; Expressed protein | ||||
STRING | OGLUM04G05130.1 | 1e-155 | (Oryza glumipatula) | ||||
STRING | ORUFI03G29410.1 | 1e-155 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP882 | 38 | 150 | Representative plant | OGRP60 | 16 | 318 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G31320.1 | 2e-35 | LOB domain-containing protein 4 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os03g45750.1 |
Entrez Gene | 4333627 |
Publications ? help Back to Top | |||
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