PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os03g45300.1 | ||||||||
Common Name | LOC4333612, Os03g0655600, OSJNBb0023J24.3, OSNPB_030655600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | FAR1 | ||||||||
Protein Properties | Length: 1067aa MW: 115734 Da PI: 5.5348 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 100.9 | 1.3e-31 | 83 | 184 | 2 | 91 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk............tekerrtraetrtgCkaklkvkkekdgkwevtkle 82 fYn YA++vGFs+r+s +++s+r+g+i++r+fvC keg+r+ + k+ + + rrtra+tr+gCka+++vkk+++g+w vtkle LOC_Os03g45300.1 83 FYNVYAHRVGFSTRISVMHRSRRDGSIMSRQFVCAKEGFRTYRGKNevspvaagsgedSGRGRRTRAVTRVGCKAMIRVKKQDNGRWAVTKLE 175 ********************************************************99999******************************** PP FAR1 83 leHnHelap 91 + HnH+l+p LOC_Os03g45300.1 176 TAHNHPLVP 184 ******986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.2E-29 | 83 | 184 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 8.9E-22 | 302 | 392 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 10.027 | 568 | 616 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 4.6E-8 | 590 | 613 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 1.1E-7 | 591 | 618 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0025281 | anatomy | pollen | ||||
PO:0001015 | developmental stage | K second mitotic division stage | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 1067 aa Download sequence Send to blast |
MERGGGGGGG GGGGVVGSEQ GTPESEMGDG DNDSVDYAAE MEADAAGNGS AAAAAYAARA 60 GVYDGVDPFE GMEFDDEEDA WTFYNVYAHR VGFSTRISVM HRSRRDGSIM SRQFVCAKEG 120 FRTYRGKNEV SPVAAGSGED SGRGRRTRAV TRVGCKAMIR VKKQDNGRWA VTKLETAHNH 180 PLVPPNQAHC LRPHKPLSEC GKQRQFGIPR NGGMLLAIEP PPPPISPPMP QTSVLQVVPH 240 YTRDGIGDHA RVILDYVKRM QAEDPAFFYA MQFIDGHPVG NIFWADARAR MAYKHFGDAV 300 FLDDYCKRNK YQLPLVAFTG VNHHCQPVLF GCAIIGDNSE ASFVWLFETL LLAMSGHHPD 360 SLTTEHDSAI QLAALKVLPR TRHRFCRWHI LNETHDKLSH LSDEFPSLHE ELVNCINMPE 420 TIDEFEVNFK ALISKVGPGN SEWLYSVYNC RQHWVPVYLR DTFFGDESSK EECASRSSFF 480 DGYISAKTDP QSFIQQYEKA LDCCYEKEVK EEFETKYSLP EIKTSSPIEK QGADLYTRSM 540 FLKFQQELVD ASVSSLEVMK EDGKSRIYKV TKSAGSEKPH MVEFNSFGSS ATCSCQMFEH 600 LGIVCRHILT VFGTQGVSSL PSQYIVKRWT KYAMERSPDK KIDEVSKVNE PKEEQKSGAE 660 DGEQSQTWRY NSLCREALRY AEEGASSVEV YIVAMQALQE AANKVNMAKR GIGQVAPNAP 720 LAVMPIAAQL PAEGFRNVPE ISFNQRKKRK RNSNNKTTEN SSNQLMYLQQ PVNFLFVAPG 780 TSSGPQGPSQ IVAAVPVSSS APHGQTSSAN HPSDGNTTSC SVAAQKNSDL SNYSGSAPSL 840 GNVVPEGEIK SSGFASQIKE SHELSQGNGN KGNNVNMASS TSSPQLVTVP VGLCLPSMDS 900 SKISADAINS TNSGSMISNG NVSFGLCQSQ STNADPRSTP EGSSIRAAAI AAGARIASPS 960 DAASIIKAAQ SKGAIHIRPG EGVPNYLKPL APQPLSSLPP GSIPNSVHPS SSHAQPGQCS 1020 FGDSAAAKDA IFGSTDSSDD DEYDEDDDTD DNDEDEGITG DEVEQE* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 745 | 750 | RKKRKR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.17067 | 0.0 | callus| leaf| panicle| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 37990401 | 0.0 | ||||
Expression Atlas | Q6AT58 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os03g45300.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os03g45300 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK120778 | 0.0 | AK120778.1 Oryza sativa Japonica Group cDNA clone:J023009J07, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015631605.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5 isoform X1 | ||||
TrEMBL | Q6AT58 | 0.0 | Q6AT58_ORYSJ; Os03g0655600 protein | ||||
STRING | OS03T0655600-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 | Representative plant | OGRP30 | 12 | 351 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 1e-166 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os03g45300.1 |
Entrez Gene | 4333612 |