PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os03g45194.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | G2-like | ||||||||
Protein Properties | Length: 557aa MW: 60876.6 Da PI: 7.1707 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 64.9 | 1.5e-20 | 388 | 442 | 4 | 55 |
G2-like 4 lrWtpeLHerFveaveqLGGsekAtPkti...lelmkvkgLtlehvkSHLQkYRl 55 lrW+ +LH+ Fveav+ GG+ +A P ++ +++m+v +Lt +++kSHLQkYR LOC_Os03g45194.1 388 LRWSDDLHKMFVEAVAYHGGPYEAKPTAVketMQAMGVTSLTTHNIKSHLQKYRE 442 89************************77722256678999**************5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF51735 | 4.11E-41 | 75 | 305 | IPR016040 | NAD(P)-binding domain |
PRINTS | PR00081 | 7.4E-14 | 75 | 92 | IPR002347 | Short-chain dehydrogenase/reductase SDR |
Pfam | PF00106 | 1.1E-38 | 76 | 288 | IPR002347 | Short-chain dehydrogenase/reductase SDR |
Gene3D | G3DSA:3.40.50.720 | 4.3E-48 | 76 | 293 | IPR016040 | NAD(P)-binding domain |
CDD | cd05233 | 1.81E-46 | 76 | 320 | No hit | No description |
PROSITE pattern | PS00061 | 0 | 232 | 260 | IPR020904 | Short-chain dehydrogenase/reductase, conserved site |
PRINTS | PR00081 | 7.4E-14 | 245 | 264 | IPR002347 | Short-chain dehydrogenase/reductase SDR |
PRINTS | PR00081 | 7.4E-14 | 269 | 286 | IPR002347 | Short-chain dehydrogenase/reductase SDR |
SuperFamily | SSF46689 | 4.12E-12 | 382 | 444 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 8.5E-19 | 384 | 443 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.0E-16 | 388 | 442 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010304 | Biological Process | PSII associated light-harvesting complex II catabolic process | ||||
GO:0015996 | Biological Process | chlorophyll catabolic process | ||||
GO:0055114 | Biological Process | oxidation-reduction process | ||||
GO:0009535 | Cellular Component | chloroplast thylakoid membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0034256 | Molecular Function | chlorophyll(ide) b reductase activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 557 aa Download sequence Send to blast |
MAATAAYLPL RAQAQVGLAP LRPSGSAAAG ARLPGRTARR RLAARGGPEA AGIRAEAVPG 60 GGGVARRAAM VPPYNVLITG STKGIGYALA KEFLKAGDNV VICSRSAERV ESAVTDLKKE 120 FGEQHVWGIV CDVREGKDVK ALVDFARDKM KYIDIWNHKK AGFSPYLCVP LAQINNAGSN 180 AYSYKPLVET SDEALMEVIT TNTLGLMICC REAINMMRNQ PRGGHIFNID GAGSDGRPTP 240 RFAAYGATKR SVVHLTKSLQ AELQMNEVNN VMVHNLSPGM VTTDLLMSGA TTKQAKFFIN 300 ILAEPANVVA DYLVPNIRAI PTNQSMKPTY IRFLTGLKAY SRIFSRIAFG ARRNKIMSNS 360 QPAQEDDCMS SILVSRLIRA MQPTRSYLRW SDDLHKMFVE AVAYHGGPYE AKPTAVKETM 420 QAMGVTSLTT HNIKSHLQKY RESFSSGVGS LHDHDLLRTT SPSKEALDLA SEMVRDNDAA 480 MAEIEMLNDL LLDHDIEMVE TSFSVDDLQM MERELMSEIK LIEHNFEISE SALDEYMDDL 540 ANYAFDLTGP ANSSSP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4iuy_A | 9e-15 | 63 | 285 | 13 | 215 | Short chain dehydrogenase/reductase |
4iuy_B | 9e-15 | 63 | 285 | 13 | 215 | Short chain dehydrogenase/reductase |
4iuy_C | 9e-15 | 63 | 285 | 13 | 215 | Short chain dehydrogenase/reductase |
4iuy_D | 9e-15 | 63 | 285 | 13 | 215 | Short chain dehydrogenase/reductase |
4iuy_E | 9e-15 | 63 | 285 | 13 | 215 | Short chain dehydrogenase/reductase |
4iuy_F | 9e-15 | 63 | 285 | 13 | 215 | Short chain dehydrogenase/reductase |
4iuy_G | 9e-15 | 63 | 285 | 13 | 215 | Short chain dehydrogenase/reductase |
4iuy_H | 9e-15 | 63 | 285 | 13 | 215 | Short chain dehydrogenase/reductase |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.98443 | 0.0 | panicle |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Strongly expressed in late-senescing leaves. {ECO:0000269|PubMed:17416733}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in leaves and stems. Also detected in non-photosynthetic tissues such as roots. {ECO:0000269|PubMed:17416733}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required for chlorophyll b degradation. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os03g45194.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by dark treatment. {ECO:0000269|PubMed:18778405}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os03g45194 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB255026 | 0.0 | AB255026.1 Oryza sativa Japonica Group NOL1 mRNA for short-chain dehydrogenase/reductase NOL1, complete cds. | |||
GenBank | AK287869 | 0.0 | AK287869.1 Oryza sativa Japonica Group cDNA, clone: J065203M24, full insert sequence. | |||
GenBank | CT841659 | 0.0 | CT841659.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C104G14, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015628274.1 | 0.0 | chlorophyll(ide) b reductase NOL, chloroplastic isoform X2 | ||||
Swissprot | Q84ST4 | 0.0 | NOL_ORYSJ; Chlorophyll(ide) b reductase NOL, chloroplastic | ||||
TrEMBL | I1PDY9 | 0.0 | I1PDY9_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA03G0258500.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10938 | 12 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01060.1 | 3e-12 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os03g45194.1 |
Publications ? help Back to Top | |||
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