PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | LOC_Os03g44710.2 | ||||||||
Common Name | FIL2, LOC4333584, Os03g0650000, YAB2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
|
||||||||
Family | YABBY | ||||||||
Protein Properties | Length: 187aa MW: 21163.1 Da PI: 9.24 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 257.4 | 2.2e-79 | 4 | 161 | 2 | 170 |
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesast 94 +++ ++e+vCyv+CnfCnti+avsvPs+s++++vtvrCGhCtsllsvnl+ +q+l+ae+h l+++lk++++++++n++++ s+s+ LOC_Os03g44710.2 4 QIVPAPEHVCYVHCNFCNTIFAVSVPSNSMLNIVTVRCGHCTSLLSVNLRGLVQALPAEDH--------LQDNLKMHNMSFRENYSEYGSSSR 88 67889*******************************************************9........899********************* PP YABBY 95 svssekl.senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 + ++ ++ s+n++e++ + +rPPekrqrvPsaynrfikeei+rika+nPdishreafs+aaknWahfP+ihfgl LOC_Os03g44710.2 89 YGRVPMMfSKNDTEHMLH----VRPPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHFPNIHFGL 161 ***99988999*****98....9****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 7.8E-73 | 9 | 161 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 1.09E-8 | 101 | 155 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 2.1E-5 | 107 | 155 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:1902183 | Biological Process | regulation of shoot apical meristem development | ||||
GO:2000024 | Biological Process | regulation of leaf development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046872 | Molecular Function | metal ion binding |
Plant Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PO Term | PO Category | PO Description | ||||
PO:0009037 | anatomy | lemma | ||||
PO:0001047 | developmental stage | lemma development stage | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 187 aa Download sequence Send to blast |
MSAQIVPAPE HVCYVHCNFC NTIFAVSVPS NSMLNIVTVR CGHCTSLLSV NLRGLVQALP 60 AEDHLQDNLK MHNMSFRENY SEYGSSSRYG RVPMMFSKND TEHMLHVRPP EKRQRVPSAY 120 NRFIKEEIRR IKANNPDISH REAFSTAAKN WAHFPNIHFG LGSHESSKKL DEAIGAPSPQ 180 KVQRLY* |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Os.16937 | 0.0 | flower| leaf| panicle| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | E-value | ||||
GEO | 117234701 | 0.0 | ||||
Expression Atlas | Q10FZ7 | - |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in leaf blades, leaf sheaths and flowers. {ECO:0000269|PubMed:17216490}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | LOC_Os03g44710.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
RiceGE | Os03g44710 |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AB274014 | 0.0 | AB274014.1 Oryza sativa Japonica Group OsYABBY2 mRNA for OsYABBY2 protein, complete cds. | |||
GenBank | AF098753 | 0.0 | AF098753.1 Oryza sativa clone FIL2 unknown mRNA. | |||
GenBank | AK070479 | 0.0 | AK070479.1 Oryza sativa Japonica Group cDNA clone:J023050P10, full insert sequence. | |||
GenBank | EU846982 | 0.0 | EU846982.1 Oryza sativa Japonica Group clone KCS205G10 YABBY mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025880111.1 | 1e-139 | protein YABBY 2 | ||||
Swissprot | Q10FZ7 | 1e-140 | YAB2_ORYSJ; Protein YABBY 2 | ||||
TrEMBL | B7EHY1 | 1e-138 | B7EHY1_ORYSJ; YABBY | ||||
TrEMBL | B8ANI4 | 1e-138 | B8ANI4_ORYSI; Uncharacterized protein | ||||
STRING | OS03T0650000-01 | 1e-138 | (Oryza sativa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G26580.2 | 1e-56 | YABBY family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | LOC_Os03g44710.2 |
Entrez Gene | 4333584 |
Publications ? help Back to Top | |||
---|---|---|---|
|