PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os03g44540.1 | ||||||||
Common Name | LOC4333575, Os03g0647600, OsHAP2H, OSNPB_030647600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | NF-YA | ||||||||
Protein Properties | Length: 355aa MW: 37409.9 Da PI: 8.9102 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 96 | 4.2e-30 | 173 | 229 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 d+p+YVNaKQy++Il+RR +Rak+++e++l k+rkpylheSRh+hA+rR+RgsgGrF LOC_Os03g44540.1 173 DAPIYVNAKQYEGILRRRRARAKAQRENRL-VKGRKPYLHESRHRHAMRRARGSGGRF 229 68****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 6.8E-33 | 171 | 232 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 37.01 | 172 | 232 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 3.6E-23 | 175 | 197 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 1.6E-27 | 175 | 229 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 3.6E-23 | 206 | 229 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0020039 | anatomy | leaf lamina |
Sequence ? help Back to Top |
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Protein Sequence Length: 355 aa Download sequence Send to blast |
MLSFKQSHEG FGHVAAAGAG PQQQQQPWWA GSQLLYGEAS PEEAALRDGG QFQVVPGGRA 60 ALDPAAPEPE KTAVPAMPKR GGGGGAPEVL KFSVFSGNLE PGDTGEKNRE HSATIAMQSP 120 LPEYNGHFEL GLGQSMVSPN YPCIDQCYGL MTTYAMKSMS GGRMLLPLNA PADAPIYVNA 180 KQYEGILRRR RARAKAQREN RLVKGRKPYL HESRHRHAMR RARGSGGRFL NTKKEATAAG 240 CGGSSKTPLA SLVSPADVAH RPGSGGRASS LSGSDVSSPG GVMYDHHRHD DADAADHYNS 300 IDHHLRTPFF TPLPIIMDSG GGGGDHASHS AAAVAAPFRW ATAAGDGCCE LLKA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_A | 8e-18 | 173 | 231 | 2 | 61 | HAPB protein |
4g92_A | 8e-18 | 173 | 231 | 2 | 61 | HAPB protein |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 213 | 222 | RHRHAMRRAR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.54660 | 0.0 | callus| leaf| panicle |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32991607 | 0.0 | ||||
Expression Atlas | Q60DJ8 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os03g44540.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os03g44540 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB288034 | 0.0 | AB288034.1 Oryza sativa Japonica Group OsHAP2H mRNA for HAP2 subunit of HAP complex, complete cds. | |||
GenBank | AK106398 | 0.0 | AK106398.1 Oryza sativa Japonica Group cDNA clone:002-102-F12, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015628114.1 | 0.0 | nuclear transcription factor Y subunit A-10 isoform X2 | ||||
TrEMBL | Q60DJ8 | 0.0 | Q60DJ8_ORYSJ; CCAAT-binding transcription factor subunit B family protein, expressed | ||||
STRING | OS03T0647600-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2307 | 37 | 90 | Representative plant | OGRP5136 | 11 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06510.3 | 3e-25 | nuclear factor Y, subunit A10 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os03g44540.1 |
Entrez Gene | 4333575 |
Publications ? help Back to Top | |||
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