PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os03g43930.2 | ||||||||
Common Name | B1394A07.10, HOX32, LOC4333544, Os03g0640800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 860aa MW: 93462.2 Da PI: 6.6202 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.6 | 4.3e-18 | 33 | 90 | 4 | 57 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++t+eq+e+Le+++ ++++ps +r++L +++ +++ +q+kvWFqNrR +ek+ LOC_Os03g43930.2 33 YVRYTPEQVEALERVYGECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 90 6789****************************************************97 PP | |||||||
2 | START | 174.4 | 7.1e-55 | 181 | 388 | 2 | 204 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEE CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galq 92 +aee+++e+++ka+ ++ Wv+++ +++g++++ +++ s+++sg a+ra+g+v +++ v+e+l+d++ W ++++ +++l vi +g g+++ LOC_Os03g43930.2 181 IAEETLAEFLSKATGTAVDWVQMVGMKPGPDSIGIIAVSHNCSGVAARACGLVSLEPT-KVAEILKDRPSWYRDCRCVDVLHVIPTGngGTIE 272 68999*****************************************************.8888888888************************ PP EEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHH CS START 93 lmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwll 181 l++++++a+++l++ Rdf+++Ry+ l++g++vi+++S+++ + p+ ++++vRae+lpSg+li+p+++g+s +++v+hvdl++++++++l LOC_Os03g43930.2 273 LIYMQTYAPTTLAApRDFWILRYTSGLEDGSLVICERSLTQSTGGPSgpnTPNFVRAEVLPSGYLIRPCEGGGSMIHIVDHVDLDAWSVPEVL 365 ************999****************************9999999******************************************* PP HHHHHHHHHHHHHHHHHHTXXXX CS START 182 rslvksglaegaktwvatlqrqc 204 r+l++s + ++k++ a+l++ + LOC_Os03g43930.2 366 RPLYESPKILAQKMTIAALRHIR 388 ******************99865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 15.256 | 27 | 91 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.7E-15 | 29 | 95 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.5E-16 | 31 | 94 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 5.34E-16 | 32 | 92 | No hit | No description |
Pfam | PF00046 | 1.0E-15 | 33 | 90 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.9E-18 | 34 | 90 | IPR009057 | Homeodomain-like |
CDD | cd14686 | 1.82E-6 | 84 | 123 | No hit | No description |
PROSITE profile | PS50848 | 27.274 | 171 | 371 | IPR002913 | START domain |
CDD | cd08875 | 1.70E-69 | 175 | 391 | No hit | No description |
Gene3D | G3DSA:3.30.530.20 | 3.9E-24 | 179 | 371 | IPR023393 | START-like domain |
SMART | SM00234 | 2.3E-47 | 180 | 390 | IPR002913 | START domain |
Pfam | PF01852 | 1.2E-52 | 181 | 388 | IPR002913 | START domain |
SuperFamily | SSF55961 | 5.36E-39 | 181 | 391 | No hit | No description |
SuperFamily | SSF55961 | 7.55E-5 | 428 | 512 | No hit | No description |
SuperFamily | SSF55961 | 7.55E-5 | 542 | 615 | No hit | No description |
Pfam | PF08670 | 1.1E-51 | 716 | 858 | IPR013978 | MEKHLA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009855 | Biological Process | determination of bilateral symmetry | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0010072 | Biological Process | primary shoot apical meristem specification | ||||
GO:0080060 | Biological Process | integument development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009049 | anatomy | inflorescence | ||||
PO:0001083 | developmental stage | inflorescence development stage | ||||
PO:0007006 | developmental stage | IL.00 inflorescence just visible stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 860 aa Download sequence Send to blast |
MAAAMVAAVH GVGRQDRSSP GGGGAPQVDT GKYVRYTPEQ VEALERVYGE CPKPSSLRRQ 60 QLIRECPILS NIEPKQIKVW FQNRRCREKQ RKEASRLQTV NRKLTAMNKL LMEENDRLQK 120 QVSRLVYENG YMRQQLHNPS VATTDTSCES VVTSGQHHQQ QNPAATRPQR DANNPAGLLA 180 IAEETLAEFL SKATGTAVDW VQMVGMKPGP DSIGIIAVSH NCSGVAARAC GLVSLEPTKV 240 AEILKDRPSW YRDCRCVDVL HVIPTGNGGT IELIYMQTYA PTTLAAPRDF WILRYTSGLE 300 DGSLVICERS LTQSTGGPSG PNTPNFVRAE VLPSGYLIRP CEGGGSMIHI VDHVDLDAWS 360 VPEVLRPLYE SPKILAQKMT IAALRHIRQI AHESSGEMPY GGGRQPAVLR TFSQRLSRGF 420 NDAVNGFPDD GWSLMSSDGA EDVTIAFNSS PNKLVGSHVN SSQLFSAIGG GILCAKASML 480 LQNVPPALLV RFLREHRSEW ADPGVDAYSA AALRASPYAV PGLRAGGFMG SQVILPLAHT 540 LEHEEFLEVI RLEGHSLCHD EVVLSRDMYL LQLCSGVDEN AAGACAQLVF APIDESFADD 600 APLLPSGFRV IPLDGKTDAP SATRTLDLAS TLEVGSGGTT RASSDTSSTC NTRSVLTIAF 660 QFSYENHLRE SVAAMARQYV RTVVASVQRV AMAIAPSRLG GQIETKNPPG SPEAHTLARW 720 IGRSYRFHTG ADLLRTDSQS TDSSLKAMWQ HSDSIMCCSL KAAPVFTFAN QAGLDMLETT 780 LIALQDISLE KILDDDGRKA LCTEFPKIMQ QGFAYLPGGV CVSSMGRPVS YEQAVAWKVL 840 SDDDTPHCLA FMFVNWSFV* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.14126 | 0.0 | callus| flower| leaf| panicle| root| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32988493 | 0.0 | ||||
Expression Atlas | Q6AST1 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os03g43930.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os03g43930 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK103284 | 0.0 | AK103284.1 Oryza sativa Japonica Group cDNA clone:J033124M18, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015632484.1 | 0.0 | homeobox-leucine zipper protein HOX32 | ||||
Swissprot | Q6AST1 | 0.0 | HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32 | ||||
TrEMBL | A0A0D3FLN2 | 0.0 | A0A0D3FLN2_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0D9ZAY3 | 0.0 | A0A0D9ZAY3_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0NYQ7 | 0.0 | A0A0E0NYQ7_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI03G28280.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | OS03T0640800-01 | 0.0 | (Oryza sativa) | ||||
STRING | OBART03G27200.1 | 0.0 | (Oryza barthii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34710.1 | 0.0 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os03g43930.2 |
Entrez Gene | 4333544 |
Publications ? help Back to Top | |||
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