PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os03g43840.1 | ||||||||
Common Name | B1394A07.19, LOC4333536, LOL3, Os03g0639600, OsJ_11851, OSJNBb0029I19.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | LSD | ||||||||
Protein Properties | Length: 187aa MW: 19466.5 Da PI: 8.4346 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 42.3 | 1.2e-13 | 7 | 31 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr +L+YP GApsV+CalC+++ LOC_Os03g43840.1 7 CHGCRSVLRYPSGAPSVCCALCQAI 31 ***********************97 PP | |||||||
2 | zf-LSD1 | 39.6 | 8.4e-13 | 48 | 72 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+Y+r+A VRC++C tV LOC_Os03g43840.1 48 CGGCRTLLMYTRNADTVRCSCCSTV 72 ***********************99 PP | |||||||
3 | zf-LSD1 | 48.9 | 1.1e-15 | 86 | 109 | 1 | 24 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 Cg+Crt+L+YP+GApsV+Ca+C+ LOC_Os03g43840.1 86 CGQCRTTLMYPYGAPSVKCAICHY 109 **********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 1.3E-12 | 4 | 34 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 6.0E-10 | 7 | 31 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 2.6E-14 | 45 | 75 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.7E-10 | 48 | 72 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 5.3E-12 | 83 | 111 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.3E-14 | 86 | 110 | IPR005735 | Zinc finger, LSD1-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0020104 | anatomy | leaf sheath |
Sequence ? help Back to Top |
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Protein Sequence Length: 187 aa Download sequence Send to blast |
MQSQIVCHGC RSVLRYPSGA PSVCCALCQA ITTVPPPAPV MEMAHLICGG CRTLLMYTRN 60 ADTVRCSCCS TVNLVRPVNN IAHVSCGQCR TTLMYPYGAP SVKCAICHYI TNTGMNTVAP 120 TPSPMPTSSG SSYNAPPSGS SYNAPPPTSA PTSRPQNVTV VVENPMTVDE KGKLVSNVVV 180 GVTTGK* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.48042 | 0.0 | callus| flower| leaf| panicle| root| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | Q6ASS2 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os03g43840.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os03g43840 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK111569 | 0.0 | AK111569.1 Oryza sativa Japonica Group cDNA clone:J013071E13, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015628086.1 | 1e-130 | protein LOL3 | ||||
Swissprot | Q6ASS2 | 1e-131 | LOL3_ORYSJ; Protein LOL3 | ||||
TrEMBL | B8AN39 | 1e-129 | B8AN39_ORYSI; Uncharacterized protein | ||||
TrEMBL | I1PDS8 | 1e-129 | I1PDS8_ORYGL; Uncharacterized protein | ||||
STRING | OS03T0639600-01 | 1e-129 | (Oryza sativa) | ||||
STRING | ORGLA03G0252400.1 | 1e-129 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1347 | 38 | 124 | Representative plant | OGRP1146 | 17 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20380.7 | 4e-56 | LSD family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os03g43840.1 |
Entrez Gene | 4333536 |
Publications ? help Back to Top | |||
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