PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os03g43810.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | bHLH | ||||||||
Protein Properties | Length: 495aa MW: 52189.3 Da PI: 6.5118 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 52.8 | 7.3e-17 | 322 | 368 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K +Ka++L +A+eY+ksLq LOC_Os03g43810.1 322 VHNLSERRRRDRINEKMRALQELIPHC-----NKTDKASMLDEAIEYLKSLQ 368 6*************************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 6.28E-21 | 316 | 380 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 18.457 | 318 | 367 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.36E-17 | 321 | 372 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 8.9E-21 | 322 | 376 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.6E-14 | 322 | 368 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.8E-18 | 324 | 373 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 495 aa Download sequence Send to blast |
MNQFVPDWSN MGDASRTLGE DDNLIELLWC NGHVVMQSQN HHRKLPPRPP EKAAAAAVQE 60 DEAGLWFPFA LADSLEKDIF SDLFYEAPVA ATAEAAPAGP GAGADGEGKT CKGDAAMAEE 120 ERGGPGAASE APRELMPPPK STNASCSRQQ TMSLADGGDN AGDLSELVRA RRSSGGAARR 180 KAEAGGGGGG ASSSMLSAIG SSICGSNQVQ VQQRTASEPG RRGAPPSAVG SANAIPCGGR 240 DHGHGHEATT VASSSGRSNC CFGTTTTTEP TSTSNRSSKR KRLDTTEDSE SPSEDAESES 300 AALARKPPAK MTTARRSRAA EVHNLSERRR RDRINEKMRA LQELIPHCNK TDKASMLDEA 360 IEYLKSLQLQ LQMMWMGSGM APPVMFPGVH QYLPRMGVGM GAAAAAMPRM PFMAAPQPVV 420 PTPPVNHLDL GVNHLQPPPT QGVGYYPLGA KAVQQQQNPP LHVPNGSIMP PPENAPNTGS 480 GMGSFYFYFY FSSD* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 326 | 331 | ERRRRD |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.19229 | 0.0 | leaf| root| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32970523 | 0.0 | ||||
Expression Atlas | Q10G90 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os03g43810.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os03g43810 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ487830 | 0.0 | AJ487830.1 Oryza sativa mRNA for BP-5 protein. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025880142.1 | 0.0 | transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like isoform X3 | ||||
TrEMBL | Q10G90 | 0.0 | Q10G90_ORYSJ; Helix-loop-helix DNA-binding domain containing protein, expressed | ||||
STRING | ORUFI03G28150.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3107 | 36 | 77 | Representative plant | OGRP258 | 16 | 128 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09530.2 | 2e-33 | phytochrome interacting factor 3 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os03g43810.1 |