PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | LOC_Os03g43730.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
|
||||||||
Family | CPP | ||||||||
Protein Properties | Length: 758aa MW: 83513.2 Da PI: 8.1587 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 46.4 | 7.9e-15 | 460 | 499 | 2 | 41 |
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 ++k+C+CkkskClk+YCeCfa++++Cse+C+C +C+N+++ LOC_Os03g43730.1 460 SCKRCSCKKSKCLKLYCECFASKVYCSESCSCRGCFNDHS 499 689**********************************987 PP | |||||||
2 | TCR | 49.2 | 1.1e-15 | 545 | 583 | 1 | 39 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCk+s C+kkYCeCf++g+ Cs +C+Ce+CkN+ LOC_Os03g43730.1 545 RHKRGCNCKRSYCVKKYCECFQSGVGCSMSCRCENCKNS 583 589***********************************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 7.8E-16 | 459 | 500 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 35.816 | 460 | 585 | IPR005172 | CRC domain |
Pfam | PF03638 | 1.2E-10 | 462 | 497 | IPR005172 | CRC domain |
SMART | SM01114 | 7.8E-15 | 545 | 586 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 4.0E-11 | 547 | 583 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 758 aa Download sequence Send to blast |
MGSETNKEGA RGGGQFEVVA TTCEVTIVVG CMKEMSAGQF YCKGEERVDG GAGIKRRGAP 60 QRKGKSPKKV EGKTYKYKGF VIEGCELDST IIMIKSSDLV HIPSIFTPPE VNSQKGSKTS 120 ICIDRSLSQA YHDSPDNASI LPTNLAQRIQ LSSDTLGSDK RHGIAGKTDH ETAQKHAKLS 180 CFDQRCLDKM KQLTSGMNVQ KRDLAKTHND EITACDWDYL GTQYDSSVVP ESDLRFETAE 240 LLLETPKNGD AMPGKSFLPI VEANLENSRR KLFQGSADCY SQSAVDNIHA YCTSRGKEVA 300 TNHVSGILPC PRESQLIPDH HFSDSLEVPS DYMAMNPSAV SQHLRGLHRR SLFNDKVRDP 360 TMGVQSVSNL GASTCATRHR SIPDDNYSKL VGSPVCALPN VDLHLVRMTE EMLAPNTSEM 420 NTHNQGDYSS QATMPTSAGN SGQENPKRKR QKCQNDNVDS CKRCSCKKSK CLKLYCECFA 480 SKVYCSESCS CRGCFNDHSH EETVLSTRNR IESRNPLAFA PKVIRTCGPG LEFGEDSNAT 540 PASSRHKRGC NCKRSYCVKK YCECFQSGVG CSMSCRCENC KNSFGVRKGI ERFETKEIER 600 ADRKMKDHPK EEQSEMDKYH ALCEIWGVRS TENLFTTPSM DSRRAFALFP SECPKSSLTS 660 STRTSSHLHS PTRTDVLLSP FGSYTQMLLG NEASDMLLQQ GDSSCTASLR IASPNKKRVS 720 PLRTGNTLSP TCRKELGLKS IIPPFPSLTG DANSELQ* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 4e-14 | 462 | 582 | 12 | 120 | Protein lin-54 homolog |
5fd3_B | 4e-14 | 462 | 582 | 12 | 120 | Protein lin-54 homolog |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Os.75387 | 0.0 | flower |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | E-value | ||||
GEO | 297722380 | 0.0 | ||||
Expression Atlas | Q10G99 | - |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | LOC_Os03g43730.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
RiceGE | Os03g43730 |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK242750 | 0.0 | AK242750.1 Oryza sativa Japonica Group cDNA, clone: J090050H19, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025879709.1 | 0.0 | protein tesmin/TSO1-like CXC 2 | ||||
TrEMBL | Q10G99 | 0.0 | Q10G99_ORYSJ; Tesmin/TSO1-like CXC domain containing protein, expressed | ||||
STRING | ORGLA03G0251700.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14774 | 19 | 21 | Representative plant | OGRP993 | 17 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G22760.1 | 1e-45 | Tesmin/TSO1-like CXC domain-containing protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | LOC_Os03g43730.1 |