PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g42420.1
Common NameLOC4333473, Os03g0622100, OSJNBb0111B07.22
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family B3
Protein Properties Length: 383aa    MW: 42968.9 Da    PI: 6.6534
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g42420.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.21.5e-18421221499
                       T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                         +++p +fa++++g    s  + l+++sg++W++ + y+ + g+ vl++GWkeFv+ang++e+D ++F+++g s+f   v +f+ 
  LOC_Os03g42420.1  42 ESMIVPSRFANNFNGH--ISEVVNLKSPSGKTWSIGVAYSDT-GELVLRSGWKEFVDANGVQENDCLLFRYSGVSSF--DVLIFDP 122
                       45899*****888666..6779***************65555.469**************************99999..8888875 PP
2B338.12.8e-122743461484
                       T-EE--HHH.HTT---..--SEEEEEETTS....-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                B3  14 grlvlpkkfaeehggkkeesktltledesg....rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                       + + ++ +fa ++ g+ +  +++++e   g     +W v++  r +s++ + ++GW++F+++ngL + D+++F+l
  LOC_Os03g42420.1 274 STVGVSPEFAGRYLGP-AMAREVVMERGGGggggDQWHVRFVRRESSRG-FHGTGWRRFARDNGLLAHDVCLFEL 346
                       5566778888888444.45678999998878999*******65555555.6788*******************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.41E-2328128IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.0E-2328125IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086315.19929123IPR003340B3 DNA binding domain
SMARTSM010191.4E-1132123IPR003340B3 DNA binding domain
CDDcd100171.28E-1840121No hitNo description
PfamPF023629.1E-1642121IPR003340B3 DNA binding domain
SuperFamilySSF1019361.84E-13253346IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.5E-14253347IPR015300DNA-binding pseudobarrel domain
CDDcd100171.55E-10257346No hitNo description
SMARTSM010190.0095259366IPR003340B3 DNA binding domain
PROSITE profilePS5086310.898261363IPR003340B3 DNA binding domain
PfamPF023624.7E-10275346IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009009anatomyplant embryo
PO:0001081developmental stagemature plant embryo stage
PO:0007042developmental stagewhole plant fruit formation stage
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MGMLKIGKNC SVCKEWQEHC YWSHMADDCK HFLTYMVGDF TESMIVPSRF ANNFNGHISE  60
VVNLKSPSGK TWSIGVAYSD TGELVLRSGW KEFVDANGVQ ENDCLLFRYS GVSSFDVLIF  120
DPSGCEKASP HFVENRGFGR EEKSAGAEGG GRDGDKNGHH QHQLEMTPHK NSSRCRSIPS  180
ACKRGLFSDE IEQDHREEKK EGDDEDEDED EDEDVDKDGE DRYYFCRHGG RVTEYNLSKG  240
DKEEISRVPV PVEPGNPVLV KVIHASHLLS SRYSTVGVSP EFAGRYLGPA MAREVVMERG  300
GGGGGGDQWH VRFVRRESSR GFHGTGWRRF ARDNGLLAHD VCLFELRLVD GAGAGDRLRR  360
RPRPTMAVHV LRRVRGRFVL IR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1355360DRLRRR
2356362RLRRRPR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.517150.0callus
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329735240.0
Expression AtlasQ10GM4-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g42420.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g42420
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0635060.0AK063506.1 Oryza sativa Japonica Group cDNA clone:001-116-F06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630283.10.0B3 domain-containing protein Os03g0622100
SwissprotQ10GM40.0Y3221_ORYSJ; B3 domain-containing protein Os03g0622100
TrEMBLA0A0D3FLD20.0A0A0D3FLD2_9ORYZ; Uncharacterized protein
STRINGOS03T0622100-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Representative plantOGRP6299819
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.13e-28B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]