PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g42410.1
Common NameOs03g0621600, OSJNBb0111B07.21
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family B3
Protein Properties Length: 307aa    MW: 34809.9 Da    PI: 10.2556
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g42410.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.11.4e-2234120598
                       -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                       l+p ++++s+  ++p++f+ ++ggk   +k ++le++sg +++v++  +k+sgr+vl++GW ++v+a++Lk gDf+vFk++g+s+   +  +f
  LOC_Os03g42410.1  34 LMPIMYMASH-KTIPNEFLHNFGGK--IPKSIKLETRSGLTFDVQV--TKNSGRVVLQSGWASYVSAHDLKIGDFLVFKYSGDSQL--KTLIF 119
                       6778888888.8*******888888..6778***************..********************************998777..77776 PP

                       - CS
                B3  98 r 98 
                       +
  LOC_Os03g42410.1 120 D 120
                       6 PP
2B343.65.4e-142243051599
                       -EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
                B3  15 rlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                        + ++kk+a+ +       e+ t++l + +g+sW+v+++ +k+ ++ +l+ GW++F+ +n+L  gD+++F l ++ ++  + v+++r+
  LOC_Os03g42410.1 224 TVEISKKYADVYlpF----EDGTVVL-QHHGKSWNVRCCLTKQNSKRFLK-GWRQFAGDNKLHLGDICLFDLLKDkKKYVMDVHIIRR 305
                       566778888666431....2225555.55*********996655554555.********************99887888888888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010190.001629122IPR003340B3 DNA binding domain
PROSITE profilePS5086313.36629122IPR003340B3 DNA binding domain
PfamPF023621.7E-2034120IPR003340B3 DNA binding domain
SuperFamilySSF1019363.92E-2040124IPR015300DNA-binding pseudobarrel domain
CDDcd100171.06E-1645120No hitNo description
Gene3DG3DSA:2.40.330.105.0E-2046132IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.4E-22201305IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.12E-20202305IPR015300DNA-binding pseudobarrel domain
CDDcd100173.47E-16207304No hitNo description
PROSITE profilePS5086311.984210306IPR003340B3 DNA binding domain
SMARTSM010190.001211306IPR003340B3 DNA binding domain
PfamPF023622.4E-12225305IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009009anatomyplant embryo
PO:0001081developmental stagemature plant embryo stage
PO:0007042developmental stagewhole plant fruit formation stage
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MVKILKTTLR ATTMLKVLVK IRLSLFLTFS VLCLMPIMYM ASHKTIPNEF LHNFGGKIPK  60
SIKLETRSGL TFDVQVTKNS GRVVLQSGWA SYVSAHDLKI GDFLVFKYSG DSQLKTLIFD  120
SSGCEKVCEK PVDMSGRSYD IAMRNSQDEK KKRKQRDISR QGTVKPSEEG LKAELVPGCI  180
LPSRTDLTRL QKNILIEKVK AINSETPIYG YVMNNSSIHG IPCTVEISKK YADVYLPFED  240
GTVVLQHHGK SWNVRCCLTK QNSKRFLKGW RQFAGDNKLH LGDICLFDLL KDKKKYVMDV  300
HIIRRK*
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ851V1
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g42410.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g42410
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0972800.0AC097280.8 Oryza sativa chromosome 3 BAC OSJNBb0111B07 genomic sequence, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629587.10.0putative B3 domain-containing protein Os03g0621600
SwissprotQ851V10.0Y3160_ORYSJ; Putative B3 domain-containing protein Os03g0621600
TrEMBLI1PDK30.0I1PDK3_ORYGL; Uncharacterized protein
STRINGORGLA03G0244900.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29012985
Representative plantOGRP5872421
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-15B3 family protein