PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g42370.1
Common NameOs03g0621600, OSJNBb0111B07.17
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family B3
Protein Properties Length: 582aa    MW: 66842.8 Da    PI: 10.1175
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g42370.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3672.7e-2124113199
                       EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                       ffkv+     +++ ++++p kfae++  +   + t++l+ ++g++ +v +  +k+s++ vltkGW eF++++++k gDf+vF+++g+s+f   
  LOC_Os03g42370.1  24 FFKVM--IGGFRR-QMTIPYKFAENFRDQ--IQGTIKLKARNGNTCSVLV--DKCSNKLVLTKGWAEFANSHDIKMGDFLVFRYTGNSQF--E 107
                       56666..445555.6********888655..4459***************..**************************************..9 PP

                       EEEE-S CS
                B3  94 vkvfrk 99 
                       vk+f+ 
  LOC_Os03g42370.1 108 VKIFDP 113
                       999986 PP
2B338.91.5e-12212285177
                       EEEE-..-HHHHT.T-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT CS
                B3   1 ffkvltpsdvlks.grlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkeg 77 
                       f+ v+++s+v+++ + + +++k+a+e+  gg+    ++lt  +++g++W+vk++++k++ r +l+kGW++F ++n+L++g
  LOC_Os03g42370.1 212 FVAVMKKSNVTRQpCYVAISRKYANEYfpGGD----QMLT-LQRHGKRWQVKFCISKRKLR-MLSKGWRKFTRDNELQVG 285
                       77889999999999999**********76555....3455.667*********77666666.89**************99 PP
3B367.12.6e-213354161299
                       HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                        ++r+++p kfa++++g+   skt++le +sg +++v++  +kk +  vl++GW++Fv+a++L+ gDf+vFk++g  +f l v +f+ 
  LOC_Os03g42370.1 335 FHKRMTIPDKFARHFKGV--ISKTIKLEPRSGYTFDVQV--TKKLNILVLGSGWESFVNAHDLNMGDFLVFKYNG--DFLLQVLIFDP 416
                       4568********999999..899****************..*******************************976..88899999985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.9E-2418116IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-2518116IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.5921114IPR003340B3 DNA binding domain
CDDcd100171.64E-2023112No hitNo description
SMARTSM010191.5E-1324114IPR003340B3 DNA binding domain
PfamPF023623.0E-1924112IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.2E-25200285IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.81E-17205288IPR015300DNA-binding pseudobarrel domain
CDDcd100173.19E-14210285No hitNo description
SMARTSM010190.0018212298IPR003340B3 DNA binding domain
PfamPF023624.8E-11212286IPR003340B3 DNA binding domain
PROSITE profilePS5086310.306213304IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.2E-25319430IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.06E-24321419IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.915324417IPR003340B3 DNA binding domain
CDDcd100171.91E-20325415No hitNo description
SMARTSM010191.4E-11327417IPR003340B3 DNA binding domain
PfamPF023626.7E-19327415IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.4E-5505571IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009009anatomyplant embryo
PO:0001081developmental stagemature plant embryo stage
PO:0007042developmental stagewhole plant fruit formation stage
Sequence ? help Back to Top
Protein Sequence    Length: 582 aa     Download sequence    Send to blast
MSKSGCERCR GRGFWDTDDQ DTYFFKVMIG GFRRQMTIPY KFAENFRDQI QGTIKLKARN  60
GNTCSVLVDK CSNKLVLTKG WAEFANSHDI KMGDFLVFRY TGNSQFEVKI FDPSGCVKAA  120
SHNAVNIGQH AQNMQGDPIE ILSCSDEHLR AQSLTTERQN QPEKDVIDNC NKKMKTEHAS  180
SSEDDQETPT AEVHRMKVEE MVRAIHSNHP VFVAVMKKSN VTRQPCYVAI SRKYANEYFP  240
GGDQMLTLQR HGKRWQVKFC ISKRKLRMLS KGWRKFTRDN ELQVGAPLAL FITLFFSPHF  300
RKMKKCGQKM RKLNTRSTAR DDQEKYFFKV MIGDFHKRMT IPDKFARHFK GVISKTIKLE  360
PRSGYTFDVQ VTKKLNILVL GSGWESFVNA HDLNMGDFLV FKYNGDFLLQ VLIFDPSGCE  420
KSTSCSMENA IDHVGQGWKE HNDISTSYHD QPKGNKHWMQ KDSSSKGNKI GNTRSSNTPS  480
KFSGCILPRG TCLPVVQEKK MKEKIQAIHS KTPMYGNVMT KCNVSGSPCV LEITQLYDDA  540
YLPFNNGQEL MLRHRDKSWK VRFYRFKNKS RKLTQVCVVI R*
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2976013370.0
Expression AtlasQ851V5-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g42370.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g42370
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0972800.0AC097280.8 Oryza sativa chromosome 3 BAC OSJNBb0111B07 genomic sequence, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025879559.10.0putative B3 domain-containing protein Os03g0621600 isoform X3
SwissprotQ851V50.0Y3216_ORYSJ; Putative B3 domain-containing protein Os03g0621600
TrEMBLI1PDK10.0I1PDK1_ORYGL; Uncharacterized protein
STRINGORGLA03G0244700.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29012985
Representative plantOGRP5872421
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-21B3 family protein