PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g42290.1
Common NameOsJ_11758
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family B3
Protein Properties Length: 350aa    MW: 40458.2 Da    PI: 10.2521
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g42290.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.14.2e-1536134399
                       EE-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE. CS
                B3   3 kvltpsdvlks.grlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefe 91 
                       +++++s+v+++ + lv+ k++a ++   +++s+t+tl+   ++r+W  k+ +rk + +y+l + W +Fv+ n++kegD+++F+l+  + ++f+
  LOC_Os03g42290.1  36 TTMKHSNVNSHhASLVIAKHYACAYF--PHTSQTITLKWhGKNRKWHPKFYIRKDQVGYILHGRWIDFVRHNHVKEGDICIFHLKnFNgRKFR 126
                       678888888886789*******8996..456779999985788*******77888888*************************9866668888 PP

                       .EEEEE-S CS
                B3  92 lvvkvfrk 99 
                        +v+++r+
  LOC_Os03g42290.1 127 ATVHLLRE 134
                       89988875 PP
2B356.26.2e-18251344798
                       .-HHHHT..T-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS..SEE..E CS
                B3   7 psdvlks..grlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr..sefelv 93 
                       +s+v++    +++l ++fa ++  ++ e +tltl +  +g+ W+vk+  r +sg   ++t GW++Fv++n+L++ D+++F+l+++  ++  ++
  LOC_Os03g42290.1 251 KSNVGTDglYIITLGRQFAIRYL-PEGE-QTLTLLTtGTGKAWQVKM--RPRSGDaRMFTLGWRDFVRDNRLQTEDICLFQLTKNseRGLAMK 339
                       455555522345899****9993.3334.45555554999*******..777776689***********************997733455566 PP

                       EEEE- CS
                B3  94 vkvfr 98 
                       v+++r
  LOC_Os03g42290.1 340 VHIIR 344
                       66666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.0E-1826130IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.66E-2029130IPR015300DNA-binding pseudobarrel domain
CDDcd100174.91E-2032123No hitNo description
SMARTSM010190.001534135IPR003340B3 DNA binding domain
PROSITE profilePS5086311.16635135IPR003340B3 DNA binding domain
PfamPF023623.6E-1435134IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.6E-22237346IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.92E-20238346IPR015300DNA-binding pseudobarrel domain
CDDcd100173.76E-15243344No hitNo description
PROSITE profilePS5086312.816245346IPR003340B3 DNA binding domain
SMARTSM010193.7E-10245346IPR003340B3 DNA binding domain
PfamPF023623.8E-16249345IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MPGYVLSRGT NLSQAHEEKL DMLVQEIRPE IPLYVTTMKH SNVNSHHASL VIAKHYACAY  60
FPHTSQTITL KWHGKNRKWH PKFYIRKDQV GYILHGRWID FVRHNHVKEG DICIFHLKNF  120
NGRKFRATVH LLRETIPHSF GALHIPKRFE SRNGRMRLKM TDDRRVSSTE CRRGTMEPST  180
TNVKKEADNE QCNNGQGKRQ EPLNFDVSVG SSKPYLTADR VSLTEEQFMK VEENVHSIQS  240
EGPIYVSIMN KSNVGTDGLY IITLGRQFAI RYLPEGEQTL TLLTTGTGKA WQVKMRPRSG  300
DARMFTLGWR DFVRDNRLQT EDICLFQLTK NSERGLAMKV HIIRHNERS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.538590.0flower
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329856600.0
Expression AtlasB9F9R1-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g42290.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g42290
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1004510.0AK100451.1 Oryza sativa Japonica Group cDNA clone:J023090P20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630232.20.0LOW QUALITY PROTEIN: B3 domain-containing protein Os03g0620500-like
SwissprotQ851W40.0Y3205_ORYSJ; B3 domain-containing protein Os03g0620500
TrEMBLB9F9R10.0B9F9R1_ORYSJ; Uncharacterized protein
STRINGORUFI03G27200.10.0(Oryza rufipogon)
STRINGORGLA03G0244100.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58531172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-07B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]