PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g42280.2
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family B3
Protein Properties Length: 315aa    MW: 36480.2 Da    PI: 9.8132
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g42280.2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.69.9e-18601421798
                       E--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..EEEEE- CS
                B3  17 vlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelvvkvfr 98 
                       v+pk++a++h   + es+t+tl+   ++++W   + +rk +++y+l ++Wk+Fv++n++kegD+++F+l+  +  ef  +v+++r
  LOC_Os03g42280.2  60 VIPKRYASAHF--PLESQTITLQRqGKNKKWYPMFYIRKDGSGYMLYGCWKNFVRDNHVKEGDMCIFHLTkFTgGEFGATVHLLR 142
                       8*********6..446779999985666****99977999999*************************87444566667777666 PP
2B360.43e-19218310899
                       -HHHHT..T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEE CS
                B3   8 sdvlks..grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkv 96 
                       s+v++    ++++ ++fa+++ +++ e++   l++ +++ W+vk+  r +sg   ++t+GW++Fv++n+L+  D+++F+l+++ s+ +++v++
  LOC_Os03g42280.2 218 SNVGTDglYIIIFGRQFATRY-LPEGEQTLTLLMTGKSNAWQVKM--RPRSGDaQMITTGWRHFVHDNHLQIEDICLFQLMNDeSKLTMTVHI 307
                       555555112346689***999.3444455566777899*******..77777779**************************998********* PP

                       E-S CS
                B3  97 frk 99 
                       +r+
  LOC_Os03g42280.2 308 IRR 310
                       *98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.05544144IPR003340B3 DNA binding domain
SMARTSM010190.001245145IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.0E-1659128IPR015300DNA-binding pseudobarrel domain
PfamPF023621.7E-1760143IPR003340B3 DNA binding domain
CDDcd100174.24E-1760142No hitNo description
SuperFamilySSF1019365.49E-1860130IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.7E-22203311IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.75E-19204311IPR015300DNA-binding pseudobarrel domain
CDDcd100177.05E-15209309No hitNo description
PROSITE profilePS5086311.801211311IPR003340B3 DNA binding domain
SMARTSM010194.7E-6211311IPR003340B3 DNA binding domain
PfamPF023623.8E-19215311IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MNCAWCMVSC TICSLFLSVE KAVKFALVYR PLHNAKFIFS FLYFTSQKYI YSIIFCLDQV  60
IPKRYASAHF PLESQTITLQ RQGKNKKWYP MFYIRKDGSG YMLYGCWKNF VRDNHVKEGD  120
MCIFHLTKFT GGEFGATVHL LRETKSGSLG SFHTSHKRFD LRDGRTWPKV TGVRRVSSRP  180
YLTADRVSLT EEQVRKVEEV VHSIQSEGPM YVSIMNKSNV GTDGLYIIIF GRQFATRYLP  240
EGEQTLTLLM TGKSNAWQVK MRPRSGDAQM ITTGWRHFVH DNHLQIEDIC LFQLMNDESK  300
LTMTVHIIRR NEKS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.593920.0callus| leaf
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329873780.0
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g42280.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g42280
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1021690.0AK102169.1 Oryza sativa Japonica Group cDNA clone:J033086H19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628609.10.0B3 domain-containing protein Os03g0620400 isoform X1
RefseqXP_015628610.10.0B3 domain-containing protein Os03g0620400 isoform X2
RefseqXP_015628611.10.0B3 domain-containing protein Os03g0620400 isoform X2
SwissprotQ851W50.0Y3204_ORYSJ; B3 domain-containing protein Os03g0620400
TrEMBLA0A0D3FLC00.0A0A0D3FLC0_9ORYZ; Uncharacterized protein
TrEMBLA2XJM20.0A2XJM2_ORYSI; Uncharacterized protein
STRINGOS03T0620400-010.0(Oryza sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36080.22e-06B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]