PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g42240.1
Common NameLOC9267568, Os03g0619800, Os03g0619825, OsJ_11753, OSJNBa0063J18.21
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family B3
Protein Properties Length: 537aa    MW: 60703 Da    PI: 9.0391
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g42240.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.37.5e-15371161297
                       HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                       + + +++p +f++++ggk   + t++le+++g  + v++  + + ++++l+ GW+ Fv+a+++keg++++F+++++s+    v ++
  LOC_Os03g42240.1  37 SMHSMIMPDRFVSHFGGK--IPGTIKLESPNGILYVVEV--TECMNKTLLQCGWEAFVDAHNIKEGESLLFRHIENSRY--EVLIL 116
                       456799******888888..5669***************..*******************************9986655..66665 PP
2B341.62.2e-132463281698
                       EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE- CS
                B3  16 lvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfr 98 
                       lv++ ++a+ h   ++e+ t+tl+ +s  ++W  ++  r  ++ ++l++ W++Fv++n L+e D+++F  ++  ++f ++v++++
  LOC_Os03g42240.1 246 LVISSRYASVHF--PRETATITLQRPSKrKKWYPRFYKRIDKSDHMLRGQWQNFVHDNCLQEEDICLFVPTKGgRNFAFTVHLLQ 328
                       799999*99997..456779*****66659******66777777*************************8766589988888876 PP
3B349.48.2e-164445271698
                       EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                B3  16 lvlpkkfaeeh.ggkkeesktltledesgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                       l l+ ++a+++   +k +++tl+l + +g  W+++l +     k++r +lt+GW++F+++n+L++gDf++F+l+++++ ++ v++++
  LOC_Os03g42240.1 444 LELSSRYAASYlP-DK-NHQTLVL-QCKGMIWQINLVVrrrYTKGKRWFLTAGWRKFAHDNRLRVGDFCLFELKKKKKLTMEVHIIS 527
                       7788999999952.33.3346665.569********7754433334478************************999*******9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.34E-2023121IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.13926119IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.6E-1727120IPR015300DNA-binding pseudobarrel domain
CDDcd100171.31E-1627117No hitNo description
SMARTSM010191.5E-729119IPR003340B3 DNA binding domain
PfamPF023624.5E-1337115IPR003340B3 DNA binding domain
SuperFamilySSF1019363.73E-18223327IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.4E-18223328IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0011230330IPR003340B3 DNA binding domain
CDDcd100172.49E-18230325No hitNo description
PROSITE profilePS5086310.292231330IPR003340B3 DNA binding domain
PfamPF023621.4E-11246328IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.1E-18419526IPR015300DNA-binding pseudobarrel domain
CDDcd100174.89E-15423527No hitNo description
PROSITE profilePS5086311.914429529IPR003340B3 DNA binding domain
SMARTSM010191.6E-9429529IPR003340B3 DNA binding domain
SuperFamilySSF1019368.63E-17440530IPR015300DNA-binding pseudobarrel domain
PfamPF023622.6E-13444527IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 537 aa     Download sequence    Send to blast
MAGGNTHRKK SCACCKEYLE HLGGKMRCFL RRMAADSMHS MIMPDRFVSH FGGKIPGTIK  60
LESPNGILYV VEVTECMNKT LLQCGWEAFV DAHNIKEGES LLFRHIENSR YEVLILDSDD  120
CEKVFSCAGI RNGSCVQDKT VDPVDSSGSS SNDTTQSSRS RNTENLTAMC SSSEKSGEDS  180
PSGYEFHESV EPQTPSGSDY VLSRRTYLSE AQKERVVTHI QDIQPEITVF VAVMKKCNLQ  240
SPAPYLVISS RYASVHFPRE TATITLQRPS KRKKWYPRFY KRIDKSDHML RGQWQNFVHD  300
NCLQEEDICL FVPTKGGRNF AFTVHLLQAE VTHSRDGTDV HKIGSSQNKR NSKMASQVHI  360
KEAPGGDVSS ESNKHGVSHE SLESEDSDGP SEPPYISSMR RRLSQLQKKT VEEKVRAIQS  420
EIPICVATIS KLAGSGGKGK FRGLELSSRY AASYLPDKNH QTLVLQCKGM IWQINLVVRR  480
RYTKGKRWFL TAGWRKFAHD NRLRVGDFCL FELKKKKKLT MEVHIISNLQ RYPEVE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1512518LKKKKKL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.728290.0callus
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ6AV21
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g42240.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g42240
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1072060.0AC107206.4 Oryza sativa chromosome 3 BAC OSJNBa0063J18 genomic sequence, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629380.10.0B3 domain-containing protein Os03g0619800
RefseqXP_015629381.10.0B3 domain-containing protein Os03g0619800
SwissprotQ6AV210.0Y3982_ORYSJ; B3 domain-containing protein Os03g0619800
TrEMBLA2XJL80.0A2XJL8_ORYSI; Uncharacterized protein
STRINGORGLA03G0243600.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58531172
Representative plantOGRP1536734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18960.12e-12B3 family protein