PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g42100.1
Common NameLOC4333457, Os03g0617800, OsJ_11741, OSJNBa0063J18.7
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 311aa    MW: 33560 Da    PI: 4.8506
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g42100.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.14.3e-102372771055
                       HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       r+RR+riN+++  L+ l+P+      +K++ +++Le+A++Y+k Lq
  LOC_Os03g42100.1 237 RKRRERINERLKILQNLVPNG-----TKVDISTMLEEAMHYVKFLQ 277
                       9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.1E-14226293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.691227276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-12231290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.3E-11233282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.03E-11236281No hitNo description
PfamPF000102.1E-7237277IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009066anatomyanther
PO:0001004developmental stageanther development stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MESGGVIAEA GWSSLDMSSQ AEESEMMAQL LGTCFPSNGE DDHHQELPWS VDTPSAYYLH  60
CNGGSSSAYS STTSSNSASG SFTLIAPRSE YEGYYVSDSN EAALGISIQE QGAAQFMDAI  120
LNRNGDPGFD DLADSSVNLL DSIGASNKRK IQEQGRLDDQ TKSRKSAKKA GSKRGKKAAQ  180
CEGEDGSIAV TNRQSLSCCT SENDSIGSQE SPVAAKSNGK AQSGHRSATD PQSLYARKRR  240
ERINERLKIL QNLVPNGTKV DISTMLEEAM HYVKFLQLQI KLLSSDEMWM YAPIAYNGMN  300
IGIDLNLSQH *
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1154541320.0
Expression AtlasQ6AV35-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g42100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g42100
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1072060.0AC107206.4 Oryza sativa chromosome 3 BAC OSJNBa0063J18 genomic sequence, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632677.10.0transcription factor bHLH139-like
RefseqXP_015632678.10.0transcription factor bHLH139-like
TrEMBLA0A0E0NYA50.0A0A0E0NYA5_ORYRU; Uncharacterized protein
TrEMBLI1PDI00.0I1PDI0_ORYGL; Uncharacterized protein
TrEMBLQ6AV350.0Q6AV35_ORYSJ; Helix-loop-helix DNA-binding domain containing protein
STRINGORUFI03G27070.10.0(Oryza rufipogon)
STRINGORGLA03G0242600.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43103270
Representative plantOGRP10481454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.12e-49bHLH family protein