PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g41800.1
Common NameOSJNBb0096H12.11
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 692aa    MW: 79693.7 Da    PI: 8.4305
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g41800.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR149.81.1e-1571157191
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtk.leleHnHel 89 
                       +fY++YA ++GF+++ks+++k         r+ +C++egk+ ++ ++  +++r+r+++++gCka +k++ ++       +v++ +el+HnH+l
  LOC_Os03g41800.1  71 NFYQRYACHAGFDIKKSRTHKA-------FREVCCTREGKHVSKVTD-GDRQRRRPSKKMGCKAFMKLRHNYdggALSSVVYDvVELQHNHPL 155
                       6****************99887.......7899**********9999.99999******************9643234456651569*****9 PP

              FAR1  90 ap 91 
                       +p
  LOC_Os03g41800.1 156 TP 157
                       86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.1E-1071157IPR004330FAR1 DNA binding domain
PfamPF105512.5E-15279332IPR018289MULE transposase domain
PROSITE profilePS509669.668532568IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009585Biological Processred, far-red light phototransduction
GO:0010018Biological Processfar-red light signaling pathway
GO:0042753Biological Processpositive regulation of circadian rhythm
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 692 aa     Download sequence    Send to blast
MGCPPASSPH QQCTPTRQAG DAPSQWMPPC LDDNDIATPT PNRVYNHGPS VPPHMVPTEG  60
MAFPTYDNAY NFYQRYACHA GFDIKKSRTH KAFREVCCTR EGKHVSKVTD GDRQRRRPSK  120
KMGCKAFMKL RHNYDGGALS SVVYDVVELQ HNHPLTPSPS AVKHMRAHKN RDDTVMQFVD  180
TMQESHVPQS CIMGVLSDLH GGQDNIPFTS RDVENRKVAN VRKENANDIN KLLEFFNECT  240
LQNPKFYWDA QLDENGVIKN LFWSHASSQV EFADFGDAVT FDTTYKTNIY EMPLAMFVGA  300
NHHMQSTLFG CALLRDEKVQ SFEWLFNTFN KWHILNRHSD PLNTIFARDA QIEPDMMLCI  360
NQTYTPYEFE TSWDQFIKSY DLEGCPIMKA LYDIREKWVP AFFKKEYCRR MTSTQRSESM  420
NKLVKHKFAD HQTALHRFAR RMLEVITDRK EKEAAETRAC SMSRLYTRAA FRLFEEVLQD  480
STDFRITQDD NFRNGLKYHH VVDNRVVFLL ESMPGEIKDS ARFLSLVPQK QFKVIADVDE  540
GVFTCKCKQW EHTGMFCTHM LRAFVHVQVE KIPAVYILKR YTMKAKSNVP FDRRDRETTR  600
PDGVQESYRT NMMMIEAFGV ARAACKLKVA FDRAMAVLKG LRSQVEEIPR DSTATVDTNT  660
QDGIAGRVQN AEISREPPSP PPKVKNKRKD P*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111116DRQRRR
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ6AU28
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g41800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g41800
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1352270.0AC135227.4 Oryza sativa chromosome 3 BAC OSJNBb0096H12 genomic sequence, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612933.10.0protein FAR1-RELATED SEQUENCE 5 isoform X1
RefseqXP_015612934.10.0protein FAR1-RELATED SEQUENCE 5 isoform X2
TrEMBLQ6AU280.0Q6AU28_ORYSJ; Putative FAR1 protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76091043
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-72FAR1-related sequence 5