PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os03g41330.1 | ||||||||
Common Name | LOC4333430, Os03g0609500, OSNPB_030609500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | LBD | ||||||||
Protein Properties | Length: 233aa MW: 23618.6 Da PI: 6.4849 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 94.7 | 1.1e-29 | 2 | 104 | 1 | 98 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 +C++C+vlr++C++ Cvl+p + ++ q++++ +v+k+FG++ ++ l+a+p ++r+++++sl+yeA+ r+ +Pv+Ga+g++++++++l+ LOC_Os03g41330.1 2 SCNGCRVLRKGCSDACVLRPSIewidgAQPQANATVFVAKFFGRAGLVASLAAVPLHHRPALFRSLLYEACGRTINPVSGAIGLMWTGNWDLC 94 6*********************9999888899************************************************************* PP DUF260 89 qlkaelallk 98 q++a+++l++ LOC_Os03g41330.1 95 QAAADAVLRG 104 ****998876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 17.682 | 1 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 9.4E-24 | 2 | 100 | IPR004883 | Lateral organ boundaries, LOB |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0007042 | developmental stage | whole plant fruit formation stage | ||||
PO:0007633 | developmental stage | endosperm development stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MSCNGCRVLR KGCSDACVLR PSIEWIDGAQ PQANATVFVA KFFGRAGLVA SLAAVPLHHR 60 PALFRSLLYE ACGRTINPVS GAIGLMWTGN WDLCQAAADA VLRGDSLRAL SAVPAAFTDR 120 DMAGLYGNVG AAAGTSSSSP DNDNSSASAA PRRKRPRNNG AGAGVGQQQL PHAVAAVLQS 180 CELDLCLTPV SPPAVQLVGG GGGASDEHST TTCEEASDGD GAGAPTLLNL FS* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.20135 | 0.0 | callus| leaf| root |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | Q75HN5 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os03g41330.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os03g41330 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK288002 | 0.0 | AK288002.1 Oryza sativa Japonica Group cDNA, clone: J075110B01, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015628211.1 | 1e-167 | LOB domain-containing protein 38 | ||||
TrEMBL | A0A0D9ZAG7 | 1e-166 | A0A0D9ZAG7_9ORYZ; Uncharacterized protein | ||||
TrEMBL | Q75HN5 | 1e-166 | Q75HN5_ORYSJ; LOB domain protein 40, putative, expressed | ||||
STRING | OGLUM03G26640.1 | 1e-167 | (Oryza glumipatula) | ||||
STRING | OS03T0609500-01 | 1e-167 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8450 | 30 | 41 | Representative plant | OGRP403 | 16 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67420.1 | 2e-56 | LOB domain-containing protein 37 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os03g41330.1 |
Entrez Gene | 4333430 |