PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g40160.1
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 805aa    MW: 94373.1 Da    PI: 7.8339
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g40160.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR183.14.6e-26136234191
              FAR1   1 kfYneYAkevGFsvrkskskks...krngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkwevtklele 84 
                       +f+n+YA  +GFsv++++s++s   krnge+++ tf+C+++gk+++e+++       + er++++ + t+C++ l+++k+ +  w++++++l+
  LOC_Os03g40160.1 136 DFFNFYALLAGFSVVIAHSYHStskKRNGEVIRVTFKCNRHGKAKSESQEeeteetVVAERNNNEIKATSCNCALVISKR-NLIWRIIRVNLD 227
                       6********************99999*******************99999899888888999******************.************ PP

              FAR1  85 HnHelap 91 
                       HnH+++p
  LOC_Os03g40160.1 228 HNHKMSP 234
                       ****975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.9E-25136234IPR004330FAR1 DNA binding domain
PROSITE profilePS5096610.423551587IPR007527Zinc finger, SWIM-type
PfamPF044348.3E-5552587IPR007527Zinc finger, SWIM-type
SMARTSM005751.4E-6562589IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 805 aa     Download sequence    Send to blast
MEQIISSQPS ISEVQQEIST ESNFVATPRA FQVEDEDLED NELENWNLDM FNLSNGQNVQ  60
NSADNSTEIG NQATTNVDTV ESNDLDANGE MLTEEDINNF LEQEQEEATK GNNAAIDAKY  120
IPRVDMQFKS IKEAHDFFNF YALLAGFSVV IAHSYHSTSK KRNGEVIRVT FKCNRHGKAK  180
SESQEEETEE TVVAERNNNE IKATSCNCAL VISKRNLIWR IIRVNLDHNH KMSPRDEVRF  240
LKSHKNMTTE EKMMIRTLKE CNIPTRHMIV ILSTLRGGLT SLPYTKKDVS NVRTCINKET  300
SSNDMMQVLQ FFRKKKEKDP KFFYEFDLDE NKKDGAMRSA IRQIFPNSTH RNCFFHIVRK  360
AFNLSGTLFK SKEGLYDEYE DIMNNSVTEE EFEYLWNEMV DSYEVQHIYF LKHMWSIRKR  420
FIPVYFKTNF CPFIKSTALS EGTNSRFKKD VGPQYSIISF LIEYVRVMDT IQNLEQLDDH  480
NSRTKRPSKL WSHYYIEYQA VKLYNSKIFK KFQVELKRTT RLQLIEVEKL KTYEVFLALN  540
QKIKVVRRRK YLVIVDSEKE EYTCICSKFE KDGLLCSHIL KIMLHLNIMK IPKKYIIDRW  600
RKKDYKEKYD FEDRIIPLSE SSILRFNILS RKCAEIASQG SKSIDSFQFT VDQIDKLEKE  660
SISMNSEQRT KQQMEIDKID TTNGEVIEET EENNEEILID PDIAKSKGRP SQRYKSFREE  720
LQSKEVYHCS YCQRTDHTFP TCPLKHIEFD LPRKKIRKTK NTAQKNAEEE QTDGSKKTNK  780
GKKQEATTQV LMEQKGTKKR KTDG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1312317RKKKEK
2543549KVVRRRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.787600.0callus
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2976012660.0
Expression AtlasQ10H78-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g40160.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g40160
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0908740.0AC090874.9 Oryza sativa chromosome 3 BAC OJ1523_A02 genomic sequence, complete sequence.
GenBankAC1096020.0AC109602.6 Oryza sativa chromosome 3 BAC OSJNBa0087M10 genomic sequence, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLQ10H780.0Q10H78_ORYSJ; Transposon protein, putative, unclassified
STRINGOB09G10870.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1533535
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.16e-29FAR1-related sequence 5