PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | LOC_Os03g40080.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
|
||||||||
Family | GRAS | ||||||||
Protein Properties | Length: 778aa MW: 88331.5 Da PI: 5.627 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 42.4 | 1.1e-13 | 360 | 429 | 1 | 70 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsets 70 l++lL++cA+avs ++++la+ +L+ ++++asp+gd qRla +++ L rl++++s++y+++ +++ + LOC_Os03g40080.1 360 LRTLLINCAQAVSVSNHSLASDILKIIRHHASPTGDDSQRLALCLAYCLDVRLTGTGSQIYHKFITKRRN 429 6789**********************************************************99877766 PP | |||||||
2 | GRAS | 212.6 | 2.2e-65 | 434 | 663 | 110 | 337 |
GRAS 110 ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgE 200 +vHiiDf+i G+QWp+L+++La+ ++gpp+lRiTg++ pesg + +++g rLa++A+++++pfe++ + ++++e+l++e+++++++E LOC_Os03g40080.1 434 LKVHIIDFGICFGFQWPSLFEELAKIEDGPPKLRITGIELPESGfrPYARSNNIGLRLADYAKTFNIPFEYQHISSNKWEALSPEDFNIEKDE 526 58*****************************************999999************************9999**************** PP GRAS 201 alaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgre 293 +l+Vn++++++ l de+ s++s+r++vL++++ ++Pkv+v + +++ + Fl+rf e +++y +lfd+l++++pr++e+r+ +Er + + LOC_Os03g40080.1 527 VLIVNCIYRIKDLGDETISINSARSRVLNTIRMMKPKVFVQGVLNGSYGVPFFLTRFKEVMYHYNSLFDMLDKNIPRDNETRMIIERDIYQYI 619 ****************************************************************************************99999 PP GRAS 294 ivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqa 337 nv+aceg er+er e+++kW+ r +aG+ ++pl+ ++ + LOC_Os03g40080.1 620 MLNVIACEGPERIERPESYKKWKVRNLKAGLVQLPLNPAIVRET 663 9***********************************99888765 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 36.806 | 334 | 680 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.9E-11 | 360 | 429 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 7.6E-63 | 434 | 663 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 778 aa Download sequence Send to blast |
MSASQNLHRL PEFCVIPATA CSREPGLPRI VIRSNMGSDD NKRFDDFHVI TNGPGSDAYS 60 NEESINLDSY IAPSTSFCSK IYNPQLYVEK GNGTTDWCQT SGGDYPEKSS INSDITLSYI 120 DKILMQEDID DRGNEDTALQ AMEEPFYELL GEKYPAFPQQ QPLCVCDHLQ NLSANTDKSN 180 GHACNTWSVT RMTNISSSMN SNGNFQGFQF PWSLSSITRE TEQFTHHSNR MVVGLKVDGL 240 SISEKPSQDN CSLQIDAHYM RKHPLFEVHD RKSYPCIEDL DLLEGRSNKQ YAIYYDEPIR 300 DEMFDNVLLC SDHKPLDEGV SLSRAMTNNS SKSSQIGQGK TSARRKTTGK RIQKRDVVDL 360 RTLLINCAQA VSVSNHSLAS DILKIIRHHA SPTGDDSQRL ALCLAYCLDV RLTGTGSQIY 420 HKFITKRRNV KDILKVHIID FGICFGFQWP SLFEELAKIE DGPPKLRITG IELPESGFRP 480 YARSNNIGLR LADYAKTFNI PFEYQHISSN KWEALSPEDF NIEKDEVLIV NCIYRIKDLG 540 DETISINSAR SRVLNTIRMM KPKVFVQGVL NGSYGVPFFL TRFKEVMYHY NSLFDMLDKN 600 IPRDNETRMI IERDIYQYIM LNVIACEGPE RIERPESYKK WKVRNLKAGL VQLPLNPAIV 660 RETQDMSSDK ASIRLCLVCY GNILSWPHPP EAEGTYWSGV ESDRVYRDCS LNNRGPLCNG 720 IPFLNGMIPV SDDFYHVSGD TREISCDTYQ VLDDFYHVSG DTYEISDDTY RISGDSY* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 3e-29 | 364 | 656 | 8 | 329 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
Expression Atlas | Q10H86 |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | LOC_Os03g40080.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
RiceGE | Os03g40080 |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC109602 | 0.0 | AC109602.6 Oryza sativa chromosome 3 BAC OSJNBa0087M10 genomic sequence, complete sequence. | |||
GenBank | AP014959 | 0.0 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015630113.1 | 0.0 | scarecrow-like protein 14 | ||||
TrEMBL | Q10H86 | 0.0 | Q10H86_ORYSJ; GRAS family transcription factor containing protein, expressed | ||||
STRING | ORGLA03G0233800.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11788 | 26 | 40 | Representative plant | OGRP11365 | 4 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G29060.1 | 1e-115 | GRAS family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | LOC_Os03g40080.1 |