PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g39100.1
Common NameLOC107276346, NAC69, Os03g0588000, OsJ_11588, OSJNBb0085A04.6, OSNPB_030588000
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 501aa    MW: 53942.2 Da    PI: 3.913
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g39100.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM83.73.6e-2671451128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgk..dk 90 
                       l pG+rF+P+d+elv++yL +++++k+l+l+ vi ++d ++v Pw+L +  +++ +e +fF++++ k+ +gkr++r +   g+W+ +    d 
  LOC_Os03g39100.1   7 LLPGLRFDPSDDELVSRYLLRRIQQKPLPLDGVIVDADPLSVPPWTLLAD-HTRGDEAFFFAEARAKNGKGKRQKRtVEGGGFWQGQRMavDG 98 
                       579***************************999**************743.456789*******************555599**966552222 PP

               NAM  91 evlsk..........kgel.....vglkktLvfykgrapkgektdWvmheyrl 128
                       e              +  +     ++ k +L f+ ++ ++g ++ Wvmhey++
  LOC_Os03g39100.1  99 ER--LvvpgddggggG--DegleiTWRKYVLSFF-AEGERG-SSGWVMHEYAV 145
                       22..133456666550..155565899999****.444454.89*******86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-324164IPR003441NAC domain
PROSITE profilePS5100529.0677164IPR003441NAC domain
PfamPF023654.1E-169144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 501 aa     Download sequence    Send to blast
MAGADGLLPG LRFDPSDDEL VSRYLLRRIQ QKPLPLDGVI VDADPLSVPP WTLLADHTRG  60
DEAFFFAEAR AKNGKGKRQK RTVEGGGFWQ GQRMAVDGER LVVPGDDGGG GGDEGLEITW  120
RKYVLSFFAE GERGSSGWVM HEYAVTSPAD LASSQLRLYR VRFSGHGKKR KREPQCLDSH  180
DDDDGGDQES ATHRRAVAET TLFDGYVPRP AADGTDQGTY GVIDGESSLA SHCLPDQIVP  240
PAEEADATAG VENPLLDEER WSPPQPALVK QNSYDLMAIS SLLFSDLPDR IDDDDLSVSQ  300
TEGTELSEQG SSGVIDDDYW RVFHGLSDLI ALPAEEADAT GGAEREEIAL LDEERCPQPQ  360
PAPPTAALVP PLQGQSSYDL MADSSLLFAD LPGSIDDDEL QRSLRASDMP DQFLAQTEEA  420
GAGGGGGAAA ALNKQSNSSP LGVEVPMALS DLESPESMPL SDLEFPESID EVLSYIDFTT  480
DDTSCLDFDM DELFSDMPAD *
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ5W6L1
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g39100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g39100
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1355020.0AC135502.4 Oryza sativa chromosome 3 BAC OSJNBb0085A04 genomic sequence, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankJN9823140.0JN982314.1 Oryza sativa Japonica Group NAC transcription factor 69 (NAC69) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630217.10.0NAC domain-containing protein 82
TrEMBLQ5W6L10.0Q5W6L1_ORYSJ; NAC transcription factor 69
STRINGOGLUM03G25450.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80222137
Representative plantOGRP9888212
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39820.16e-14NAC domain containing protein 94