PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g39050.1
Common NameOSJNBb0085A04.3
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 443aa    MW: 47292.8 Da    PI: 3.8482
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g39050.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM64.53.2e-2071311109
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgkdkev 92 
                       lppG+rF+P+d+elv++yL +++++k+l+l+ vi ++d ++v Pw+   + +++ +e +fF+ ++ k+ +gkr++r +   g+W+ +     v
  LOC_Os03g39050.1   7 LPPGLRFDPSDDELVSRYLLRRIQQKPLPLDGVIVDADPLSVPPWTPL-ADHTRGDEAFFFAGARAKNGKGKRQKRtVEGGGFWQGQRMA--V 96 
                       79****************************999************953.33456789*******************555599**966542..2 PP

               NAM  93 lsk..........kgel..........vglkktLvfy 109
                         +          +  +          ++ k +L f+
  LOC_Os03g39050.1  97 DGErlvvpgdgggG--VdgsggggleiTWRKYVLSFF 131
                       11111223344430..133444444446666667776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.1E-234142IPR003441NAC domain
PROSITE profilePS5100520.6597173IPR003441NAC domain
PfamPF023652.5E-118142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MAGADGLPPG LRFDPSDDEL VSRYLLRRIQ QKPLPLDGVI VDADPLSVPP WTPLADHTRG  60
DEAFFFAGAR AKNGKGKRQK RTVEGGGFWQ GQRMAVDGER LVVPGDGGGG VDGSGGGGLE  120
ITWRKYVLSF FAEGEQGSSG WVQKRKREPQ CLDSHDDEDG GDQERAAPRR GVALPAADGT  180
DQGSYGVIDG EPSLVSHCLP DQIVPPAEEA DATAGAVDEE RWSPPQPASP TAALVKQNSY  240
DLMVISSLLF SDLPDRIDDD DLSVSQTEGT ELSEQGSSGV IDDDYWREAD ATGGAEREEI  300
ALLDEERCPQ PQPAPPTDAL VPPLQGQNSY DVMADSSLLF ADLPGRIDDD ELQRSLRVSD  360
MPDLFLSQTE EAGAGGGGGA APVLNKQSNS SPLGVMDSEV PIVLSDLEFP ESIDEVLSYI  420
DFATDDCLDF DMDELFSDMP AD*
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ5W6L6
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g39050.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g39050
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1355020.0AC135502.4 Oryza sativa chromosome 3 BAC OSJNBb0085A04 genomic sequence, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630217.10.0NAC domain-containing protein 82
TrEMBLQ5W6L60.0Q5W6L6_ORYSJ; No apical meristem (NAM) family protein
STRINGONIVA03G26150.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80222137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33480.21e-11NAC domain containing protein 41