PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g37920.1
Common NameOs03g0576100
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 778aa    MW: 88493.3 Da    PI: 8.5553
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g37920.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR168.22.1e-2199179190
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                       ++Yn+YA +vGFs+rks+ k++  ng+i+++++vC+k+g++e++++          +trt Cka+++ +  +++ w+v+k++leHnH+l+
  LOC_Os03g37920.1  99 EMYNTYAGKVGFSIRKSNVKRR-SNGTIYQKHMVCNKQGQQETSSSL--------DTTRTCCKARVQFSVCRKEIWMVQKVVLEHNHDLV 179
                       58**************998876.8999*************9998766........99*******************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.0E-1999179IPR004330FAR1 DNA binding domain
PfamPF105515.9E-30303394IPR018289MULE transposase domain
PROSITE profilePS509669.903581619IPR007527Zinc finger, SWIM-type
PfamPF044349.1E-6591617IPR007527Zinc finger, SWIM-type
SMARTSM005755.5E-7594621IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0008270Molecular Functionzinc ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0025281anatomypollen
PO:0001015developmental stageK second mitotic division stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 778 aa     Download sequence    Send to blast
MAGQVSTGNA AASASMAGEG QEEDPAAAGT SHLVSFSPAL AHGKEGHGFQ SPAPMDAEIA  60
GDVGAGGERI TQKVDDKVVQ TLIVPQVGMS FESKDKAYEM YNTYAGKVGF SIRKSNVKRR  120
SNGTIYQKHM VCNKQGQQET SSSLDTTRTC CKARVQFSVC RKEIWMVQKV VLEHNHDLVS  180
PNKSHKLRSQ RRVIEADRQL IGQIREAGMK PAQVYGFMKE WYGGADKVPF SKMDCNNEIG  240
RERKKYLESN DTQTLLEYLR NKQLEDPTFF YAIQVDKEDG RIANFFWADG QSIMDYACFG  300
DFVSFDTTFD TNKCEMPFAP LLGTNHHKQT IIFGAALLFN QTIESFVWLF ETFLTAMSGK  360
HPSTIFTDQD AAMAAAIAFV FRNTSHRLCL WHIYLNGGKN LSHVIHKHPN KFLADFKRCV  420
YEDRSEYYFN KMWHELLSEY NLEDNKWISN LYKLREKWAI VFRNSFTADI TSTQRSEGMN  480
NVYKKRFRRK LGLSELLVEC DKVSATLREN ELDADFKSRH SNPVTYIPNL PMLKIAAESY  540
TRSMYSELED EFKQQFTLSC KLLKTEGATL TFVVMPMEYD HEATVVFNPT EMTITCSCRK  600
YECIGLLCKH ALRVFNMNKV FTLPSHYILN RWTKYAKSGF YIQKQGSEKE TLKAHAARIS  660
RHATSVELKC SVSKELLDDL EQAINKLDLE ADNSLSKMQE KSCEVPLNSN GCVKDTLNGT  720
ISFLVPRVVK GPKSRRSKDV VEKKKWQKKC VDPTHCSMLF PVLLILFVFI LLYATSM*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.539040.0flower
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329859320.0
Expression AtlasQ10HU3-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g37920.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g37920
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1007230.0AK100723.1 Oryza sativa Japonica Group cDNA clone:J023116K06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025879530.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLQ10HU30.0Q10HU3_ORYSJ; Os03g0576100 protein
STRINGSb06g016820.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-129FAR1-related sequence 5