PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os03g37900.1 | ||||||||
Common Name | OSJNBa0008D12.13 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | GRAS | ||||||||
Protein Properties | Length: 138aa MW: 15192.7 Da PI: 8.2466 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 61.9 | 1.3e-19 | 38 | 134 | 1 | 94 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetsekn..sseelaalklfsevsPi 90 lv+ L++cA+ vs+g++e+a +Larl e+as +g p++R+aayf e L r++r++++++++ pp+e +++ ++ ++al++++ ++Pi LOC_Os03g37900.1 38 LVRMLTACADSVSAGNHEAAIYYLARLCEMASLAGpMPIHRVAAYFIEVLTLRVVRMWPHMFNISPPRELTNDAfsGDDDAMALRILNTITPI 130 6789*******************************99*********************************988798999************** PP GRAS 91 lkfs 94 l ++ LOC_Os03g37900.1 131 LLLG 134 9776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 12.827 | 12 | 137 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 4.3E-17 | 38 | 134 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 138 aa Download sequence Send to blast |
MGAGRRRRQK MMPPPLSNFD ARNGVPTPGQ AEQETMELVR MLTACADSVS AGNHEAAIYY 60 LARLCEMASL AGPMPIHRVA AYFIEVLTLR VVRMWPHMFN ISPPRELTND AFSGDDDAMA 120 LRILNTITPI LLLGKHS* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.89110 | 1e-104 | callus| flower| panicle |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 115466135 | 1e-104 | ||||
Expression Atlas | Q75G81 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the shoot apical meristem (SAM) and elongating cells of young seedlings. Expressed in leaf joints, culms, internodes, stems, young panicles, primary roots and lateral roots. {ECO:0000269|PubMed:19220793}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that acts as positivie regulator of brassinosteroid (BR) signaling (PubMed:19220793, PubMed:22685166). Functions downstream of BRI1 and GSK2 to modulate BR responses. Acts as a direct target of GSK2 kinase to mediate BR responses (PubMed:22685166). Involved in feedback inhibition of BR biosynthetic genes. Repressed by BZR1 (PubMed:19220793). {ECO:0000269|PubMed:19220793, ECO:0000269|PubMed:22685166}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os03g37900.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by 24-epibrassinolide. {ECO:0000269|PubMed:19220793}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os03g37900 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC146468 | 0.0 | AC146468.1 Oryza sativa Japonica Group cultivar Nipponbare chromosome 3 clone OSJNBa0008D12 map MAP_LOC, complete sequence. | |||
GenBank | AP014959 | 0.0 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025881992.1 | 2e-50 | protein DWARF AND LOW-TILLERING-like | ||||
Swissprot | Q9LWU9 | 1e-51 | DLT_ORYSJ; Protein DWARF AND LOW-TILLERING | ||||
TrEMBL | A0A0E0NXF9 | 3e-97 | A0A0E0NXF9_ORYRU; Uncharacterized protein | ||||
TrEMBL | Q75G81 | 3e-97 | Q75G81_ORYSJ; Scarecrow transcription factor family protein, putative | ||||
STRING | ORUFI03G24530.1 | 5e-98 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP24047 | 6 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G63100.1 | 2e-24 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os03g37900.1 |
Publications ? help Back to Top | |||
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