PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | LOC_Os03g33090.1 | ||||||||
Common Name | LOC4333227, Os03g0445700, OsJ_11413, OSJNBa0035N15.7, OSNPB_030445700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 205aa MW: 21037.1 Da PI: 8.1436 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 96.6 | 2.6e-30 | 2 | 103 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 +C++C+vlr++C+++Cvl+p++ +++q +++ +v+k+FG++ +l++++a+pe +r+++++sl+yeA r+ +Pv+Gavg+++++++ l+ LOC_Os03g33090.1 2 SCNGCRVLRKGCSDGCVLRPCLqwidaADAQGHATVFVAKFFGRAGLLSFISAVPEAQRPALFQSLLYEAAGRTINPVHGAVGLLWTGNWPLC 94 6*********************9998656778************************************************************* PP DUF260 89 qlkaelall 97 q+++e++l+ LOC_Os03g33090.1 95 QAAVETVLR 103 ***999876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 19.212 | 1 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.0E-25 | 2 | 101 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006807 | Biological Process | nitrogen compound metabolic process | ||||
GO:0060776 | Biological Process | simple leaf morphogenesis |
Plant Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PO Term | PO Category | PO Description | ||||
PO:0009030 | anatomy | carpel | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage | ||||
PO:0007606 | developmental stage | gynoecium development stage |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 205 aa Download sequence Send to blast |
MSCNGCRVLR KGCSDGCVLR PCLQWIDAAD AQGHATVFVA KFFGRAGLLS FISAVPEAQR 60 PALFQSLLYE AAGRTINPVH GAVGLLWTGN WPLCQAAVET VLRGGAIGPL PELGGACGGA 120 GGDLYGAAKR NGGWSTFSTA KRVRKAEVPE APSCDLGLCL SPGSPPAVGE RKPALRPGTP 180 SMSSDESGTT TGGERDPVLL NLFV* |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Os.53259 | 0.0 | callus| flower| leaf| panicle| root |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | E-value | ||||
GEO | 32981647 | 0.0 | ||||
Expression Atlas | Q6AV61 | - |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | LOC_Os03g33090.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
RiceGE | Os03g33090 |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK071624 | 0.0 | AK071624.1 Oryza sativa Japonica Group cDNA clone:J023106M18, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015629353.1 | 1e-145 | LOB domain-containing protein 37 | ||||
Swissprot | Q9FN11 | 3e-69 | LBD37_ARATH; LOB domain-containing protein 37 | ||||
TrEMBL | A0A0D3FKA5 | 1e-144 | A0A0D3FKA5_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0NX24 | 1e-144 | A0A0E0NX24_ORYRU; Uncharacterized protein | ||||
TrEMBL | I1PCP2 | 1e-144 | I1PCP2_ORYGL; Uncharacterized protein | ||||
TrEMBL | Q6AV61 | 1e-144 | Q6AV61_ORYSJ; Expressed protein | ||||
STRING | ORUFI03G23490.1 | 1e-145 | (Oryza rufipogon) | ||||
STRING | OS03T0445700-01 | 1e-145 | (Oryza sativa) | ||||
STRING | ORGLA03G0213800.1 | 1e-145 | (Oryza glaberrima) | ||||
STRING | OBART03G22820.1 | 1e-145 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4084 | 36 | 75 | Representative plant | OGRP403 | 16 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G67420.1 | 5e-70 | LOB domain-containing protein 37 |
Link Out ? help Back to Top | |
---|---|
Phytozome | LOC_Os03g33090.1 |
Entrez Gene | 4333227 |
Publications ? help Back to Top | |||
---|---|---|---|
|