PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g31240.1
Common NameLOC4333158, Os03g0425900, OSJNBa0020H02.7, OSNPB_030425900
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 418aa    MW: 44287.9 Da    PI: 6.7122
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g31240.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.90.00071355377123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++Cp+C+k F +   L  H r+H
  LOC_Os03g31240.1 355 FVCPICSKEFGSGQALGGHKRSH 377
                       89**************9999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.161739IPR015880Zinc finger, C2H2-like
SuperFamilySSF576676.91E-81739No hitNo description
Gene3DG3DSA:3.30.160.602.1E-41740IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139127.4E-51739IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.5331740IPR007087Zinc finger, C2H2
PROSITE patternPS0002801939IPR007087Zinc finger, C2H2
SuperFamilySSF576676.91E-8274301No hitNo description
PfamPF139121.2E-8278303IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.138279306IPR007087Zinc finger, C2H2
SMARTSM003551.5279301IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280281301IPR007087Zinc finger, C2H2
SMARTSM003550.048355377IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.18355378IPR007087Zinc finger, C2H2
PfamPF139128.0E-12355378IPR007087Zinc finger, C2H2
PROSITE patternPS000280357377IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0025281anatomypollen
PO:0001015developmental stageK second mitotic division stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MDDDDVVVLS SASATRHSCK VCGKGFACGR SLGGHMRSHS LTEVDAVAAA VAPAYERADD  60
DEGGDGKTVR RWMQSGGGYG LRENPKKTRR LSAGSGGGGG GGDNDDGDAC HHRGGDLLSS  120
SSCRPVLGRV RSHAPPAGGA AYADDSEDVG VDVDGGGGDD RYRDREMLVM AAPRRRPRSM  180
RVPAPVRDEF VVDEEPEDVA LCLVMLSRDT GRPWNSRPSD EYSSLMYNSS YHHHHDAVSD  240
DDLELSLSSP YADTEIRTKK RRKTTGAAST AGGEKRGRYE CHGCGRAFLS YQALGGHRAS  300
HKRINSNCSL VKPPADQPEP SIETSFSSAS TSVSPADTMI SAATISKTVK KATKFVCPIC  360
SKEFGSGQAL GGHKRSHSIA GELYERGHAD GIVKLEQPLL ADRFLDLNLP APGGDDG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1172178PRRRPRS
2258262KKRRK
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329907920.0
Expression AtlasQ75GS7-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g31240.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g31240
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1379990.0AC137999.2 Oryza sativa chromosome 3 BAC OSJNBa0020H02 genomic sequence, complete sequence.
GenBankAK1055830.0AK105583.1 Oryza sativa Japonica Group cDNA clone:001-128-E09, full insert sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630118.10.0uncharacterized protein LOC4333158
TrEMBLQ75GS70.0Q75GS7_ORYSJ; Os03g0425900 protein
STRINGOS03T0425900-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38613573
Representative plantOGRP1266344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.16e-20C2H2-like zinc finger protein