PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os03g29760.2 | ||||||||
Common Name | LOC4333094, Os03g0411100, Os03g29760, OSNPB_030411100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | NF-YA | ||||||||
Protein Properties | Length: 318aa MW: 34760.7 Da PI: 9.306 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 103 | 2.7e-32 | 163 | 219 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep++VNaKQy++Il+RRq+Rakle+++k k+rkpylheSRh+hA++R+RgsgGrF LOC_Os03g29760.2 163 EEPIFVNAKQYNAILRRRQTRAKLEAQNKA-VKGRKPYLHESRHHHAMKRARGSGGRF 219 69****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 2.9E-35 | 161 | 222 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 36.904 | 162 | 222 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 1.7E-27 | 164 | 219 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 3.2E-23 | 165 | 187 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 167 | 187 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 3.2E-23 | 196 | 219 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0020039 | anatomy | leaf lamina |
Sequence ? help Back to Top |
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Protein Sequence Length: 318 aa Download sequence Send to blast |
MIMLLQEMEN HPVQCMAKTN YDFLARNNYP MKQLVQRNSD GDSSPTKSGE SHQEASAVSD 60 SSLNGQHTSP QSVFVPSDIN NNDSCGERDH GTKSVLSLGN TEAAFPPSKF DYNQPFACVS 120 YPYGTDPYYG GVLTGYTSHA FVHPQITGAA NSRMPLPVDP SVEEPIFVNA KQYNAILRRR 180 QTRAKLEAQN KAVKGRKPYL HESRHHHAMK RARGSGGRFL TKKELLEQQQ QQQQQKPPPA 240 SAQSPTGRAR TSGGAVVLGK NLCPENSTSC SPSTPTGSEI SSISFGGGML AHQEHISFAS 300 ADRHPTMNQN HRVPVMR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 2e-21 | 162 | 224 | 1 | 63 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.10440 | 0.0 | callus| flower| leaf| panicle| stem| vegetative meristem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32981618 | 0.0 | ||||
Expression Atlas | Q852G5 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os03g29760.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os03g29760 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK062135 | 0.0 | AK062135.1 Oryza sativa Japonica Group cDNA clone:001-045-F05, full insert sequence. | |||
GenBank | EU847011 | 0.0 | EU847011.1 Oryza sativa Japonica Group clone KCS132A05 CCAAT-binding transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015631980.1 | 0.0 | nuclear transcription factor Y subunit A-4 | ||||
Refseq | XP_025879587.1 | 0.0 | nuclear transcription factor Y subunit A-4 | ||||
Refseq | XP_025879588.1 | 0.0 | nuclear transcription factor Y subunit A-4 | ||||
TrEMBL | Q852G5 | 0.0 | Q852G5_ORYSJ; CCAAT-binding transcription factor | ||||
STRING | OS03T0411100-01 | 0.0 | (Oryza sativa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G14020.1 | 4e-37 | nuclear factor Y, subunit A6 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os03g29760.2 |
Entrez Gene | 4333094 |
Publications ? help Back to Top | |||
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