PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g27390.1
Common NameLOC4333025, Os03g0391700, OSJNBa0065F09.5
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 316aa    MW: 34234 Da    PI: 4.8912
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g27390.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.10.000182643031054
                       HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       +rRR+ri +  + Lr+++P      +k  +  ++L +A+ Y+k+L
  LOC_Os03g27390.1 264 KRRRERIQETVAALRKIVPGG---IAK--DATAVLDEAICYLKYL 303
                       9******************97...333..3458999999999999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.597254303IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.5E-7264310IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.53E-4264308No hitNo description
SuperFamilySSF474591.83E-6264311IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009030anatomycarpel
PO:0007130developmental stagesporophyte reproductive stage
PO:0007606developmental stagegynoecium development stage
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MGEKVNPWCH WSNPPWTESS ANNLHPPDVS LDNTNSVALP TYLNSDGYIY SGVAASMPSI  60
AASVTDRPVS FSSRFVTTLV PSVGLSTAET LRKRPLVFFH NVNNTFTVGP LLSKGTLDTV  120
PELQGSNETN VTDVGAQNTE CMHENTEEID ALLCSDSDEG CLKVQELNNR VRKYPMQNDT  180
MSVESVASAG ASQPAKKRRL SSGTDRSVVD TASSARPDHS VDQKHLSHDD DAQSCCIGEV  240
ESDHQFALRE GEEAEGDDGP DDRKRRRERI QETVAALRKI VPGGIAKDAT AVLDEAICYL  300
KYLKLKVKTL GAVSL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1262266RKRRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.593840.0callus| flower| leaf| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329756920.0
Expression AtlasQ75KP4-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g27390.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g27390
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0993230.0AC099323.6 Oryza sativa chromosome 3 BAC OSJNBa0065F09 genomic sequence, complete sequence.
GenBankAK0656740.0AK065674.1 Oryza sativa Japonica Group cDNA clone:J013036B10, full insert sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631787.10.0transcription factor PIF4
TrEMBLI1PBY10.0I1PBY1_ORYGL; Uncharacterized protein
TrEMBLQ75KP40.0Q75KP4_ORYSJ; Expressed protein
STRINGORGLA03G0187700.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100311820
Representative plantOGRP1276534