PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os03g27090.1 | ||||||||
Common Name | LOC9272330, Os03g0388600, OSJNBa0017N12.27, OSNPB_030388600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | MYB | ||||||||
Protein Properties | Length: 318aa MW: 33199.4 Da PI: 8.0923 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.3 | 3.1e-17 | 16 | 64 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEde+lv +v q+Gg+ +W++ +++ g++R+ k+c++rw +yl LOC_Os03g27090.1 16 KGPWTREEDEKLVAYVDQHGGHgSWRSLPKRAGLNRCCKSCRLRWINYL 64 79*******************9*************************97 PP | |||||||
2 | Myb_DNA-binding | 54.5 | 2.7e-17 | 70 | 113 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++T+eE++ ++ ++ lG++ W+tIa +++ gRt++++k++w++ LOC_Os03g27090.1 70 RGNFTPEEEQAIITLHSVLGNK-WSTIATRLP-GRTDNEIKNYWNT 113 89********************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.296 | 11 | 64 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.25E-29 | 13 | 111 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.3E-13 | 15 | 66 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-14 | 16 | 64 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.1E-24 | 17 | 71 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.06E-10 | 18 | 64 | No hit | No description |
PROSITE profile | PS51294 | 26.742 | 65 | 119 | IPR017930 | Myb domain |
SMART | SM00717 | 4.3E-16 | 69 | 117 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.5E-15 | 70 | 113 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.29E-12 | 72 | 115 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.0E-27 | 72 | 119 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009005 | anatomy | root |
Sequence ? help Back to Top |
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Protein Sequence Length: 318 aa Download sequence Send to blast |
MGRLRPPCCD ESSVKKGPWT REEDEKLVAY VDQHGGHGSW RSLPKRAGLN RCCKSCRLRW 60 INYLRPDIKR GNFTPEEEQA IITLHSVLGN KWSTIATRLP GRTDNEIKNY WNTRLKKRLI 120 GAGIDPATHR ARPRPPAPGD LATALPQLVA LASLAVDLAV GHAAAAGGAW GAANGAVDYQ 180 QADAAAAQLQ CLQHLLLQPQ TTPATSATSG GGGHPTELNA ASSFLTQAVA SYAAAAATPL 240 PSLVVPGGSQ PLELKRWQDH IGGDHVGAVS PFAGAATVTG HHGGGGGGGG EFLPSELTAL 300 LCSANAIDDL QSSNLDF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-26 | 16 | 119 | 7 | 108 | B-MYB |
1mse_C | 3e-26 | 16 | 119 | 4 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 3e-26 | 16 | 119 | 4 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.86759 | 0.0 | root |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 297722174 | 0.0 | ||||
Expression Atlas | Q75LP7 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Specifically and transiently expressed in root endodermal cells overlying the early stages of lateral root primordia formation. {ECO:0000269|PubMed:24902892, ECO:0000269|PubMed:25482809}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os03g27090.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os03g27090 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK243428 | 0.0 | AK243428.1 Oryza sativa Japonica Group cDNA, clone: J100067L15, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015631094.1 | 0.0 | transcription factor MYB93 | ||||
Swissprot | Q9S9Z2 | 7e-70 | MYB93_ARATH; Transcription factor MYB93 | ||||
TrEMBL | Q75LP7 | 0.0 | Q75LP7_ORYSJ; Myb-like DNA-binding domain containing protein, expressed | ||||
STRING | OS03T0388600-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18018 | 10 | 10 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16770.2 | 5e-65 | myb domain protein 9 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os03g27090.1 |
Entrez Gene | 9272330 |
Publications ? help Back to Top | |||
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