PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os03g26210.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | bHLH | ||||||||
Protein Properties | Length: 275aa MW: 30319.2 Da PI: 5.4678 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 13.4 | 0.00015 | 59 | 108 | 1 | 54 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r++ ++erE+ R ++N+ f eL +l + + + Ka iL+ +++ +++L LOC_Os03g26210.1 59 RKVHKSEREKLKRGHLNDLFGELGNMLEAD----RQSNGKACILTDTTRILRDL 108 678899*********************997....57788889999888888776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 2.9E-9 | 56 | 128 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.23E-11 | 56 | 127 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 10.264 | 58 | 108 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010106 | Biological Process | cellular response to iron ion starvation | ||||
GO:0055072 | Biological Process | iron ion homeostasis | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 275 aa Download sequence Send to blast |
MGSFLVDWFS AGNGRGRFLE EAMVPSERGD VATAIRPAAA DKLVHGPISD KKCRKKVPRK 60 VHKSEREKLK RGHLNDLFGE LGNMLEADRQ SNGKACILTD TTRILRDLLS QVKSLRQENS 120 TLQNESNYVT MERNELQDEN GALRSEISDL QNELRMRATG SPGWGHGATG SPLPVPPSPG 180 TVFPSQQPMQ PSPMTTSTVF PLQQPLPQPT VIEPSARQPL ELKLFLEAPP AEDPEPSEDQ 240 EAPNNVARPQ PRYPTEASSW PISLGLPRME DEQM* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.9216 | 1e-165 | callus| flower| leaf| panicle| root| seed| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that plays a positive role in salt stress tolerance. Interacts with TIFY11A/JAZ9 and binds to the promoter of some potassium ion transporter genes to regulate potassium homeostasis during salt stress. {ECO:0000269|PubMed:25617318}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os03g26210.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os03g26210 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK068704 | 0.0 | AK068704.1 Oryza sativa Japonica Group cDNA clone:J013159M16, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015633301.1 | 0.0 | transcription factor BHLH062-like | ||||
Refseq | XP_015633302.1 | 0.0 | transcription factor BHLH062-like | ||||
Swissprot | Q69V10 | 1e-75 | BH062_ORYSJ; Transcription factor BHLH062 | ||||
TrEMBL | A0A0E0NVT0 | 0.0 | A0A0E0NVT0_ORYRU; Uncharacterized protein | ||||
TrEMBL | B8AQJ0 | 0.0 | B8AQJ0_ORYSI; Uncharacterized protein | ||||
TrEMBL | Q10KL8 | 0.0 | Q10KL8_ORYSJ; Helix-loop-helix DNA-binding domain containing protein, expressed | ||||
STRING | ORUFI03G20000.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | OS03T0379300-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2481 | 38 | 84 | Representative plant | OGRP6793 | 8 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47640.3 | 2e-28 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os03g26210.1 |
Publications ? help Back to Top | |||
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