PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g25430.1
Common NameOs03g0370250, OSNPB_030370250
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family GeBP
Protein Properties Length: 378aa    MW: 39938.4 Da    PI: 6.1877
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g25430.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573111.74.6e-3582181297
            DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkife 90 
                       lfqrlw+eeDeiv+L+++ +f+a++g+   +++ d+d fye +++++++++sksqlveK+rrLK+K++++v++ +++g+++sf+++h+q ife
  LOC_Os03g25430.1  82 LFQRLWTEEDEIVILRAFAEFTAQRGTafASHQyDTDPFYEDMRRRLQLDFSKSQLVEKLRRLKRKYRNCVDRlRATGQSFSFRSPHEQAIFE 174
                       79*************************9977778***************************************999***************** PP

            DUF573  91 lskkiWg 97 
                       +++ iW+
  LOC_Os03g25430.1 175 IARGIWR 181
                       ******7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.6E-3083180IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MLPTVVDDPS AAAAAAVGAA ASSSFPDADV YGNGDSDDID FPSDPNHATT QAFSSAAAAA  60
AAAGPGGGGG AGSGSGGERR PLFQRLWTEE DEIVILRAFA EFTAQRGTAF ASHQYDTDPF  120
YEDMRRRLQL DFSKSQLVEK LRRLKRKYRN CVDRLRATGQ SFSFRSPHEQ AIFEIARGIW  180
RPTSDKHGRD ADSDDDALPD AAAAVAVPAP ANGEVRSPSS TRAQQRRGRR RRTAAAAAAT  240
ATAADASEPP QPYPPAPAPA PVKAEDALPH FFPQGAAVTA TAHVHGVDPA SAAASAAANA  300
EGGILAPLFK EMVRAMLTAG MAPPSLEPPA PGIPMKGERW RQQRILELEV YLRRIDLLQD  360
QVRTALEELK STPPATQ*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.844550.0root
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasC7J0C0
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g25430.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g25430
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0826440.0AC082644.10 Oryza sativa chromosome 3 BAC OSJNBa0013M12 genomic sequence, complete sequence.
GenBankAK2432080.0AK243208.1 Oryza sativa Japonica Group cDNA, clone: J100042A05, full insert sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCT8377480.0CT837748.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA129A20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632846.10.0probable transcription factor At3g04930
TrEMBLC7J0C00.0C7J0C0_ORYSJ; Os03g0370250 protein (Fragment)
TrEMBLQ10KU20.0Q10KU2_ORYSJ; Expressed protein
STRINGOS03T0370250-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97437123
Representative plantOGRP31841028
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.25e-33DNA-binding storekeeper protein-related transcriptional regulator