PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g25120.1
Common NameHSF10, HSFB4D, LOC107277264, Os03g0366800, OsJ_10971
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family HSF
Protein Properties Length: 306aa    MW: 33950.9 Da    PI: 6.3494
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g25120.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.31.6e-35371292103
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                       Fl+k+y++++d+++++++sw e++ +fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ F+kg k+ll
  LOC_Os03g25120.1  37 FLSKTYQLVDDPSTDDVVSWGEDEATFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVADR---------WEFANEFFRKGAKHLL 120
                       9****************************************************************999.........**************** PP

                       XXXXXXXXX CS
      HSF_DNA-bind  95 ekikrkkse 103
                       ++i+r+ks+
  LOC_Os03g25120.1 121 SEIHRRKSS 129
                       ******987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004156.5E-5833126IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.52E-3334126IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.1E-3734126IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000564.7E-203760IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.4E-3137126IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.7E-207587IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434076100IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.7E-2088100IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009009anatomyplant embryo
PO:0001081developmental stagemature plant embryo stage
PO:0007042developmental stagewhole plant fruit formation stage
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MAFLVERCGG EMVVSMERSH GRSTTTAAAV TAAPAPFLSK TYQLVDDPST DDVVSWGEDE  60
ATFVVWRPPE FARDLLPNYF KHNNFSSFVR QLNTYGFRKI VADRWEFANE FFRKGAKHLL  120
SEIHRRKSSS CSQPQPPPPF PMHQHYPLSL FSPPTTPRSP PVGAAAAAAY HFQEEYCSSP  180
ADYAGGGGDL LAALSEDNRQ LRRRNSLLLS ELAHMRKLYN DIIYFLQNHV EPVAPPPLAA  240
ATSCRLVELG PSTTERRRCA ASPSGDNDDD AAVRLFGVRL DDDHGKKRRV QLVQEDEGDE  300
QGSEG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-212712620129Heat shock factor protein 1
5d5v_B3e-212712620129Heat shock factor protein 1
5d5v_D3e-212712620129Heat shock factor protein 1
5d8k_B2e-21371305109Heat shock factor protein 2
5d8l_B2e-21371305109Heat shock factor protein 2
5d8l_D2e-21371305109Heat shock factor protein 2
5d8l_F2e-21371305109Heat shock factor protein 2
5d8l_H2e-21371305109Heat shock factor protein 2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.688441e-153panicle
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ10KX8
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g25120.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g25120
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1257840.0AC125784.1 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0012F18, from chromosome 3, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627976.10.0heat stress transcription factor B-4d
RefseqXP_025880033.10.0heat stress transcription factor B-4d
RefseqXP_025880034.10.0heat stress transcription factor B-4d
RefseqXP_025880035.10.0heat stress transcription factor B-4d
RefseqXP_025880036.10.0heat stress transcription factor B-4d
SwissprotQ10KX80.0HFB4D_ORYSJ; Heat stress transcription factor B-4d
TrEMBLA0A0D9Z7S90.0A0A0D9Z7S9_9ORYZ; Uncharacterized protein
TrEMBLI1PBK00.0I1PBK0_ORYGL; Uncharacterized protein
STRINGOS03T0366800-000.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.11e-65heat shock transcription factor B4
Publications ? help Back to Top
  1. Baniwal SK, et al.
    Heat stress response in plants: a complex game with chaperones and more than twenty heat stress transcription factors.
    J. Biosci., 2004. 29(4): p. 471-87
    [PMID:15625403]
  2. Guo J, et al.
    Genome-wide analysis of heat shock transcription factor families in rice and Arabidopsis.
    J Genet Genomics, 2008. 35(2): p. 105-18
    [PMID:18407058]