PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g21710.1
Common NameLOC4332755
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family WRKY
Protein Properties Length: 357aa    MW: 36383.7 Da    PI: 4.9404
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g21710.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY78.38.8e-25133193259
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                       +Dg+ WrKYGqK++++s++prsYYrCt++   gC ++++ +r++ dp+  +itY geH+++
  LOC_Os03g21710.1 133 EDGHVWRKYGQKDIQNSPYPRSYYRCTHKldqGCGARRQTQRCEADPSNYDITYYGEHTCR 193
                       8***************************9999**************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.8E-27124195IPR003657WRKY domain
PROSITE profilePS5081123.479127195IPR003657WRKY domain
SuperFamilySSF1182901.96E-24130195IPR003657WRKY domain
SMARTSM007743.7E-34132194IPR003657WRKY domain
PfamPF031066.5E-24133193IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MAFSSEGGVP AERVAAAVND LVEVRDGLVR LRGFLPPPPQ AEQSSSRPPC AAELMDATMS  60
KLMSAMATLG GSGDIAGEVD AAGRWTSVAE SADPMVVRRE GESSAGRTRR RRGGGSRSGR  120
GRSSNKRVAA TLEDGHVWRK YGQKDIQNSP YPRSYYRCTH KLDQGCGARR QTQRCEADPS  180
NYDITYYGEH TCRDPSTIIP TAIANAAGAA SDGPNNNIIS FATGGVVVAN SSRLAREGTT  240
ATTTSAATQL SSSWGTSGGG GGGDDVFSSS GERFMQWDEL AAAVGHVSSV GVTSSTVGSA  300
PAAENDGGNG DTAAGGGGDG GGAGSFPSSP SAGSLGFVVG PLGSIEDVDD FFPFDP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-29125193169OsWRKY45
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.544670.0callus
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329904530.0
Expression AtlasQ10LT9-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g21710.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g21710
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1052440.0AK105244.1 Oryza sativa Japonica Group cDNA clone:001-113-F08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629721.10.0probable WRKY transcription factor 53 isoform X1
TrEMBLA0A0E0NUN60.0A0A0E0NUN6_ORYRU; Uncharacterized protein
TrEMBLQ10LT90.0Q10LT9_ORYSJ; WRKY DNA binding domain containing protein
STRINGORUFI03G16960.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139812526
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.18e-22WRKY DNA-binding protein 46