PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g21660.1
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 739aa    MW: 82078.9 Da    PI: 9.5278
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g21660.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR162.61.2e-19262342190
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                       ++Yn+YA ++GFs+rks+ k++  +g+i+++  vCs++g+r+++++          +trt+C+a+++ +  ++g w v+k++leHnH l+
  LOC_Os03g21660.1 262 DMYNTYAGKIGFSIRKSQAKHR-VDGTIYQKYIVCSNQGQRQTKSSL--------DTTRTSCDACVQFSICRKGIWTVQKVVLEHNHCLV 342
                       58***************98876.9999**************998766........99******************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.0E-15263342IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 739 aa     Download sequence    Send to blast
MPCPLVAAAN EAASARRHRC RRRCRVRSSP PTRQHPTAHR RQEPRRPLIA SPVADAAFAH  60
RLRHRRCRVR SSPPQLPPPP PRSLVVTAPP RGGGAGGRCG EEREKAEGYR REMGENRLGG  120
DGGKKSGADR MQNSSPCAPT RMHDAWMRRS SDGRPTQAGP HPARLDSAHD MAGQSSHEHD  180
VIVGDHGADG KQRTQISEFM TMEEDVAGAI DANANGDDNT LCRIVLEEMA DKAPNQANDK  240
VAQTLILPQV GMAFDSEQKV YDMYNTYAGK IGFSIRKSQA KHRVDGTIYQ KYIVCSNQGQ  300
RQTKSSLDTT RTSCDACVQF SICRKGIWTV QKVVLEHNHC LVSPNKSHKV RSQRRVIEAD  360
RQLIGQIREA GMKPAQVYEF MKEWYGGADK VEGKWAIVFR DSFTADMTST QRSEGMNNVF  420
KKRFRRKLGL SELLVECDKV AASLRENELD ADFKSRNSSP VTCIPNLPML KTAADSYTRK  480
MYSEFEEEFT KQFSLSCILC KHALRVFNMN EVFTMPSQYI LNRWTKYAKK GFNIDKQGSE  540
KETLKTHAAR ISRKATSIAL KCSVSKELLD DLEKAINNLD LEADSSLSKM QEKTCEVPLN  600
SNDCVMDTLN GAISIRVPRV VKGPKSRRSK DAVEKKKRKK TKTAKNKGED LNNASEDEDE  660
DVGDVCGQSS TMAANDVCGQ SSTMAAYDVY GQSSTMAAYD GFGQSSTMDA PLIQGGFTSL  720
LFGVQRDSAM AARKLHFN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11626RHRCRRRCRVR
2635639KKRKK
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2976085190.0
Expression AtlasQ10LU5-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g21660.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g21660
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1376990.0AC137699.1 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0029K10, from chromosome 3, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLQ10LU50.0Q10LU5_ORYSJ; Transposon protein, putative, unclassified, expressed
STRINGSb04g027010.11e-174(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1508638
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.19e-20FAR1-related sequence 5