PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g21060.1
Common NameLOC4332717, NAC58, Os03g0327800, OSJNBb0014I10.5, OSNPB_030327800
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 393aa    MW: 42195.6 Da    PI: 8.5836
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g21060.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1739.2e-5491391128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                       lppGfrFhPtdeel+v+yL+++++++++++ ++i++vdiyk++PwdLp+k + +++ewyfFs+rd+ky++g r+nra+ sgyWkatg+dk+++
  LOC_Os03g21060.1   9 LPPGFRFHPTDEELIVHYLRNRAASSPCPV-SIIADVDIYKFDPWDLPSKENYGDREWYFFSPRDRKYPNGIRPNRAAGSGYWKATGTDKPIH 100
                       79****************************.89***************8777899************************************** PP

               NAM  94 sk....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       s+    ++e vg+kk Lvfykgr pkg+kt+W+mheyrl
  LOC_Os03g21060.1 101 SSggaaTNESVGVKKALVFYKGRPPKGTKTNWIMHEYRL 139
                       *977776777***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.92E-645173IPR003441NAC domain
PROSITE profilePS5100561.6919173IPR003441NAC domain
PfamPF023652.0E-2710139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009825Biological Processmultidimensional cell growth
GO:0009835Biological Processfruit ripening
GO:0009908Biological Processflower development
GO:0010150Biological Processleaf senescence
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009089anatomyendosperm
PO:0007042developmental stagewhole plant fruit formation stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MVLSNPAMLP PGFRFHPTDE ELIVHYLRNR AASSPCPVSI IADVDIYKFD PWDLPSKENY  60
GDREWYFFSP RDRKYPNGIR PNRAAGSGYW KATGTDKPIH SSGGAATNES VGVKKALVFY  120
KGRPPKGTKT NWIMHEYRLA AADAHAANTY RPMKFRNTSM RLDDWVLCRI YKKSSHASPL  180
AVPPLSDHEQ DEPCALEENA PLYAPSSSSA ASMILQGAAA GAFPSLHAAA AATQRTAMQK  240
IPSISDLLNE YSLSQLFDDG GAAAAAPLQE MARQPDHHHH QQQQHALFGH PVMNHFIANN  300
SMVQLAHLDP SSSAAASTSA GAVVEPPAVT GKRKRSSDGG EPTIQALPPA AAAAKKPNGS  360
CVGATFQIGS ALQGSSLGLS HQMLLHSNMG MN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-72917717169NO APICAL MERISTEM PROTEIN
1ut4_B1e-72917717169NO APICAL MERISTEM PROTEIN
1ut7_A1e-72917717169NO APICAL MERISTEM PROTEIN
1ut7_B1e-72917717169NO APICAL MERISTEM PROTEIN
3swm_A1e-72917720172NAC domain-containing protein 19
3swm_B1e-72917720172NAC domain-containing protein 19
3swm_C1e-72917720172NAC domain-containing protein 19
3swm_D1e-72917720172NAC domain-containing protein 19
3swp_A1e-72917720172NAC domain-containing protein 19
3swp_B1e-72917720172NAC domain-containing protein 19
3swp_C1e-72917720172NAC domain-containing protein 19
3swp_D1e-72917720172NAC domain-containing protein 19
4dul_A1e-72917717169NAC domain-containing protein 19
4dul_B1e-72917717169NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.172860.0flower| leaf| panicle| root| seed
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2976008550.0
Expression AtlasQ8H7M1-
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Up-regulated during anther and flower development and leaf senescence. {ECO:0000269|PubMed:22278768}.
UniprotTISSUE SPECIFICITY: Highest expression in stamens. Expressed in leaves. {ECO:0000269|PubMed:18813954, ECO:0000269|PubMed:22278768}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family associated with male fertility. Involved in anther development, but not in senescence. Reduced expression of NAC5 via RNAi leads to male-sterility. {ECO:0000269|PubMed:22278768}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00221DAPTransfer from AT1G69490Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g21060.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought, salt and cold treatments. {ECO:0000269|PubMed:18813954}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g21060
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2435140.0AK243514.1 Oryza sativa Japonica Group cDNA, clone: J100075D15, full insert sequence.
GenBankJN9823130.0JN982313.1 Oryza sativa Japonica Group NAC transcription factor 58 (NAC58) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632401.10.0NAC transcription factor 47
SwissprotQ8H4S44e-86NAC10_ORYSJ; NAC domain-containing protein 10
TrEMBLQ8H7M10.0Q8H7M1_ORYSJ; NAC domain transcription factor, putative, expressed
STRINGOS03T0327800-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123736123
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.11e-85NAC-like, activated by AP3/PI
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]