PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os03g20910.1 | ||||||||
Common Name | LOC4332705, Os03g0325600, OSNPB_030325600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | WOX | ||||||||
Protein Properties | Length: 357aa MW: 36474.8 Da PI: 8.487 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 47.4 | 3.3e-15 | 40 | 100 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+++eq+ +Le+ F++ +p ++e ++ k l + +++V++WFqNrR + ++ LOC_Os03g20910.1 40 RSRWTPKPEQILILESIFNSgMVNPPKDETVRIRKLLerfgAVGDANVFYWFQNRRSRSRR 100 89*****************99*************************************997 PP | |||||||
2 | Wus_type_Homeobox | 106.6 | 1.5e-34 | 39 | 102 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RWtP+peQi iLe++++sG+++P+k+e+ ri++ Le++G+++d+NVfyWFQNr++R+r++q LOC_Os03g20910.1 39 VRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLERFGAVGDANVFYWFQNRRSRSRRRQ 102 589***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.71E-14 | 36 | 108 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 11.256 | 36 | 101 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.2E-6 | 38 | 105 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-8 | 40 | 107 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 6.1E-13 | 40 | 100 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0001081 | developmental stage | mature plant embryo stage | ||||
PO:0007042 | developmental stage | whole plant fruit formation stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 357 aa Download sequence Send to blast |
MEGSSNSPDR QSSGGSPPEE RGGGGSGGGG GRSAAGEPVR SRWTPKPEQI LILESIFNSG 60 MVNPPKDETV RIRKLLERFG AVGDANVFYW FQNRRSRSRR RQRQMQAAAA AAAAAASSSS 120 PSANTSPAAA SAATVQVGLP PGAVVHTMAM GGSACQYEQQ ASSSSSSGST GGSSLGLFAH 180 GAGASGAGGY LQASCGASAS ASSALAPGLM GDVVDSGGSD DLFAISRQMG FVGSPRCSPA 240 SSPATPSSAA TAAQQQFYSC QLPAATITVF INGVPMEMPR GPIDLRAMFG QDVMLVHSTG 300 ALLPVNDYGI LMQSLQIGES YFLVTIHLQA LTSWSHRSLS TPISQCSFVF MKAPHF* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 20 | 31 | RGGGGSGGGGGR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.51648 | 0.0 | callus| flower| panicle| root |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32973280 | 0.0 | ||||
Expression Atlas | Q10M28 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os03g20910.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os03g20910 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK111000 | 0.0 | AK111000.1 Oryza sativa Japonica Group cDNA clone:002-174-E11, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015629005.1 | 0.0 | WUSCHEL-related homeobox 6 isoform X1 | ||||
Swissprot | Q10M29 | 0.0 | WOX6_ORYSJ; WUSCHEL-related homeobox 6 | ||||
TrEMBL | I1PAW9 | 0.0 | I1PAW9_ORYGL; Uncharacterized protein | ||||
TrEMBL | Q10M28 | 0.0 | Q10M28_ORYSJ; Homeobox domain containing protein, expressed | ||||
STRING | OS03T0325600-01 | 0.0 | (Oryza sativa) | ||||
STRING | ORGLA03G0151500.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1078 | 37 | 109 | Representative plant | OGRP12771 | 4 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17810.2 | 1e-31 | WUSCHEL related homeobox 12 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os03g20910.1 |
Entrez Gene | 4332705 |
Publications ? help Back to Top | |||
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