PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g20650.1
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bZIP
Protein Properties Length: 220aa    MW: 22887.6 Da    PI: 10.7281
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g20650.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_144.92.4e-14162203546
                       CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLk 46 
                       +r +r++kNRe+A rsR+RK+a++ eLe+k+  Le+eNk+L+
  LOC_Os03g20650.1 162 RRKKRMIKNRESAARSRARKQAYTNELENKISRLEEENKRLR 203
                       6899*************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003387.4E-10158213IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.22160203IPR004827Basic-leucine zipper domain
PfamPF001705.0E-12162203IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.31E-10162203No hitNo description
Gene3DG3DSA:1.20.5.1701.0E-12162204No hitNo description
CDDcd147074.34E-20162203No hitNo description
PROSITE patternPS000360165180IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MSSHQGSGGV SRQGSLCGLA LSEVEGQLHG VNLDDLLRTG GGGAGAGAAA AGRKTVDEVW  60
RDIQGATGNG FLRPAGAAAG QMTLEDFLSR AGADSGSGGG GGADGARWAR AHHHHVGRPV  120
PRPLGLGAGP VLDALYHDGP VSGSKRAPAA GEGAAAEKTV ERRKKRMIKN RESAARSRAR  180
KQAYTNELEN KISRLEEENK RLRMHKVSKP VFVHHFQEP*
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ10M55
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g20650.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g20650
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1186740.0AC118674.3 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0093J20, from chromosome 3, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632165.11e-146ABSCISIC ACID-INSENSITIVE 5-like protein 2
TrEMBLQ10M551e-155Q10M55_ORYSJ; BZIP transcription factor family protein, expressed
STRINGOS03T0322700-001e-145(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44413367
Representative plantOGRP1592233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41070.38e-27bZIP family protein