PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g20550.1
Common NameLOC4332680, Os03g0321700, OsJ_10658, OSNPB_030321700
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family WRKY
Protein Properties Length: 211aa    MW: 23642.2 Da    PI: 8.2124
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g20550.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY64.41.9e-203394259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-S.SSTTEEEEEEES--SS- CS
              WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversa.edpkvveitYegeHnhe 59
                      +Dg++WrKYG K++++ +fpr YYrCt++   +Cp++k++++++ +dp +  +tY +eH+++
  LOC_Os03g20550.1 33 NDGHQWRKYGEKKINNCNFPRYYYRCTYKdnmNCPATKQIQQKDySDPPLYSVTYYNEHTCN 94
                      8***************************99999*******976538**************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.3E-232094IPR003657WRKY domain
SuperFamilySSF1182906.54E-222694IPR003657WRKY domain
PROSITE profilePS5081115.6862796IPR003657WRKY domain
SMARTSM007747.8E-313295IPR003657WRKY domain
PfamPF031066.3E-243393IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MSPVPSPHQS HHLGHGSRKE KRMRKVDTFA PHNDGHQWRK YGEKKINNCN FPRYYYRCTY  60
KDNMNCPATK QIQQKDYSDP PLYSVTYYNE HTCNSAFLPL SPSEFQLQTA SGKAVSICFE  120
SSGAQEPMTN ASSPSSSAAR RSTPSENKNQ PLPRHSEAYS WGVGVVEQKP SCTELQSCST  180
ECQDAFSAGT IPEETVDAGR FGSIRFFHFL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A4e-143393968OsWRKY45
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.331310.0callus| flower| leaf| stem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ10M65
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g20550.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g20550
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1016530.0AK101653.1 Oryza sativa Japonica Group cDNA clone:J033057D07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631650.11e-159probable WRKY transcription factor 35
TrEMBLA0A0D3FHV51e-157A0A0D3FHV5_9ORYZ; Uncharacterized protein
TrEMBLA0A0D9Z6J21e-157A0A0D9Z6J2_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0GLP91e-157A0A0E0GLP9_ORYNI; Uncharacterized protein
TrEMBLA0A0E0KD321e-157A0A0E0KD32_ORYPU; Uncharacterized protein
TrEMBLA0A0E0NUC31e-157A0A0E0NUC3_ORYRU; Uncharacterized protein
TrEMBLA2XG481e-157A2XG48_ORYSI; Uncharacterized protein
TrEMBLI1PAT81e-157I1PAT8_ORYGL; Uncharacterized protein
TrEMBLQ10M651e-157Q10M65_ORYSJ; Os03g0321700 protein
STRINGOGLUM03G15660.11e-158(Oryza glumipatula)
STRINGORUFI03G16080.11e-158(Oryza rufipogon)
STRINGOS03T0321700-011e-158(Oryza sativa)
STRINGONIVA03G16490.31e-158(Oryza nivara)
STRINGOPUNC03G15030.51e-158(Oryza punctata)
STRINGORGLA03G0148400.11e-158(Oryza glaberrima)
STRINGOBART03G15470.11e-158(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP203235100
Representative plantOGRP1411644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.17e-19WRKY DNA-binding protein 46