PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os03g20310.4 | ||||||||
Common Name | LOC4332660, Os03g0318600, OsJ_10635, OSNPB_030318600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | bZIP | ||||||||
Protein Properties | Length: 334aa MW: 37069.9 Da PI: 8.9412 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 33.1 | 1.2e-10 | 48 | 78 | 4 | 34 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeek 34 k+ rr+++NReAAr+sR+RKka++++Le LOC_Os03g20310.4 48 QKVLRRLAQNREAARKSRLRKKAYVQQLESS 78 5899************************974 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 9.2E-7 | 45 | 108 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 8.875 | 47 | 91 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.3E-7 | 49 | 79 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 4.5E-7 | 50 | 92 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 3.7E-8 | 51 | 91 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 52 | 67 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 4.5E-33 | 131 | 206 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0007042 | developmental stage | whole plant fruit formation stage | ||||
PO:0007633 | developmental stage | endosperm development stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 334 aa Download sequence Send to blast |
MADASSRTDT STVLDTDDKN QMVDGQSGAI VPSNSSDRSD RSDKPMDQKV LRRLAQNREA 60 ARKSRLRKKA YVQQLESSKL KLASLEQEIN KARQQGIYIS SSGDQTHAMS GNGAMTFDLE 120 YARWLEEQNK QINELRTAVN AHASDSDLRL IVDGIMAHYD EIFRLKGVAA KADVFHILSG 180 MWKTPAERCF LWLGGFRSSE LLKLLVNQLE PLTEQQLLGL SNLQQSSQQA EDALSQGMEA 240 LQQSLADTLA GSLGPSGSSG NVANYMGQMA MAMGKLGTLE NFLRQADNLR QQTLHQMQRI 300 LTIRQAARAL LAIHDYFSRL RALSSLWLAR PRE* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.15238 | 0.0 | callus| flower| leaf| panicle| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 116011622 | 0.0 | ||||
Expression Atlas | Q6IVC3 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os03g20310.4 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os03g20310 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK242257 | 0.0 | AK242257.1 Oryza sativa Japonica Group cDNA, clone: J075183E21, full insert sequence. | |||
GenBank | AY620414 | 0.0 | AY620414.1 Oryza sativa (japonica cultivar-group) clone OSJNBa0005J15 bZIP transcription factor mRNA, complete cds. | |||
GenBank | HM991173 | 0.0 | HM991173.1 Oryza sativa Japonica Group cultivar Dongjin putative TGA2-like protein 1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015632465.1 | 0.0 | transcription factor TGA2.2 | ||||
Refseq | XP_015632466.1 | 0.0 | transcription factor TGA2.2 | ||||
Refseq | XP_015632467.1 | 0.0 | transcription factor TGA2.2 | ||||
Swissprot | Q6IVC3 | 0.0 | TGA22_ORYSJ; Transcription factor TGA2.2 | ||||
TrEMBL | A0A0D9Z6H1 | 0.0 | A0A0D9Z6H1_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0GLM7 | 0.0 | A0A0E0GLM7_ORYNI; Uncharacterized protein | ||||
TrEMBL | B8AN01 | 0.0 | B8AN01_ORYSI; Uncharacterized protein | ||||
STRING | OS03T0318600-01 | 0.0 | (Oryza sativa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12250.2 | 1e-138 | TGACG motif-binding factor 6 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os03g20310.4 |
Entrez Gene | 4332660 |
Publications ? help Back to Top | |||
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